View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7852_low_2 (Length: 409)
Name: NF7852_low_2
Description: NF7852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7852_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 79 - 382
Target Start/End: Original strand, 4466068 - 4466394
Alignment:
| Q |
79 |
gaattaaatttttgttacaaccattttgtccttcaccatttgtatggatgcgcaaaactaacattttgataatatgacttttgtgtagactttactaacc |
178 |
Q |
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| T |
4466068 |
gaattcaatttttgttacaaccattttgtctttcaccatttgtatggatgcgcaaaactaacattttgataatatgacttttgtgtagactttactaacc |
4466167 |
T |
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| Q |
179 |
ttcatatagaacgag--------------tatatatata---------ttaacacaagccttctctttaaatttttattaaggtacacatttttcattaa |
255 |
Q |
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| T |
4466168 |
ttcatatagaacgagtgtgtgtgtgtgtgtatatatatccccatacacttaacacaagccttctctttaaatttttattaaggtacacatttttcattaa |
4466267 |
T |
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| Q |
256 |
tttttgtgcatattcctcaacaacattcctaactagatcaatagaagacaagtctggcctaactcgaaattgacttgctcttccaagaacgttttctgca |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4466268 |
tttttgtgcatattcctcaacaacattcctaactagatcaatagaagacaagtctggcctaactcaaaattgacttgctcttccaagaacgttttctgca |
4466367 |
T |
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| Q |
356 |
acccaaaaaccaagtcgataaattgta |
382 |
Q |
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| T |
4466368 |
acccataaaccaagtcgataaattgta |
4466394 |
T |
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