View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7853_high_2 (Length: 450)
Name: NF7853_high_2
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7853_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 42915514 - 42915057
Alignment:
| Q |
1 |
acacaattgactagtttcatttcggattactgatttttgacagtattgttgtcaagaaaaaataacagatatt-------------aagagtgttaagca |
87 |
Q |
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| T |
42915514 |
acacaattgactagtttcatttgggattactgatttttgacagtattgttgtcaagaaaaaataacagatattttctatctgttgtaagagtgttaagca |
42915415 |
T |
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| Q |
88 |
agaatcaaattaggatct----------------atgtgaaattatttcatttgaacattaatgatacaatgttttcgtcattttttagtgatgataaag |
171 |
Q |
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| T |
42915414 |
agaatcaaattaggatcttttcaaataattttctatgtgaaattatttcatttgaacattaatgatacaatgttttcgacattttttagtgatgataaag |
42915315 |
T |
|
| Q |
172 |
aattttttataacttacataacataaattcttctcttctaaaagtcaaattaaatgaaggaattgaaattcattaccatttgaataatccattattagca |
271 |
Q |
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| T |
42915314 |
aattt---ataacttacataacataaattcttctcttctaaaagtcaaattaaatgaaggaattgaaattcattaccatttgaatcatccattattacca |
42915218 |
T |
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| Q |
272 |
tattctaccattaccatttgttgtagtgatggttacttgtttccacaagcagtggatggcatgtgatcttaatttataatgtggaatggggtagggtttc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42915217 |
tattctaccattaccatttgttgtagtgatggttacttgtttccacaagcagtggatggcatgtgatcttaatttataatgtggaatggggtagggtttc |
42915118 |
T |
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| Q |
372 |
ctcaagtaaattaggaaaagagtactttcaacagtttagagtggaagctagttggcccctg |
432 |
Q |
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| T |
42915117 |
ccaaagtaaattaggaaaagagtactttcaacagtttagagtggaagctagttggcccctg |
42915057 |
T |
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