View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7853_low_1 (Length: 534)
Name: NF7853_low_1
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7853_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 259 - 510
Target Start/End: Complemental strand, 962781 - 962530
Alignment:
| Q |
259 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctgcatataggatcacccaataggtcagtaac |
358 |
Q |
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| T |
962781 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctacatataggatcacccaataggtcagtaac |
962682 |
T |
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| Q |
359 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatctctatcact |
458 |
Q |
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| T |
962681 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatcactatcact |
962582 |
T |
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| Q |
459 |
gcctcttcaaccttctttgatgatggtttttgccaattttcggctgctatct |
510 |
Q |
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| T |
962581 |
gcctcttcaaccttctttgatgatggtttttgccaattttcagctgctatct |
962530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 963021 - 962816
Alignment:
| Q |
19 |
acatcaatatagtgtgtcaactcttagtctacacatttatatgttaatataatcnnnnnnngttatatgattcaacttcaagataatgtgtcaacgagat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
963021 |
acatcaatatagtgtgtcaactcttagtctacacatttatatgttaatataatctttttttgttatatgattcaacttcaagataatgtgtctatgagat |
962922 |
T |
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| Q |
119 |
attagctcgcagtaagnnnnnnnnttcaaatatcttcgaggatagttgtaaaatagtcattactgtcactttattttataataatttctccttctcgatc |
218 |
Q |
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| T |
962921 |
attagctcgcagtaagaaaaaaaattcaaatctcttcgaggatagttgtaaaatagtcattactgtcactttattttataataatttctccttctcgatc |
962822 |
T |
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| Q |
219 |
aacttt |
224 |
Q |
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|||||| |
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| T |
962821 |
aacttt |
962816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 48727580 - 48727624
Alignment:
| Q |
163 |
gttgtaaaatagtcattactgtcactttattttataataatttct |
207 |
Q |
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| T |
48727580 |
gttgtaaaatagtcattaatgtcactttagttcataataatttct |
48727624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 33998763 - 33998717
Alignment:
| Q |
162 |
agttgtaaaatagtcattactgtcactttattttataataatttctc |
208 |
Q |
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| T |
33998763 |
agttgtaaaatagtcattaatgtcactttaattaatagtaatttctc |
33998717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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