View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7853_low_12 (Length: 250)

Name: NF7853_low_12
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7853_low_12
NF7853_low_12
[»] chr5 (2 HSPs)
chr5 (1-170)||(41222153-41222322)
chr5 (168-238)||(41222675-41222747)
[»] chr8 (1 HSPs)
chr8 (23-152)||(13375861-13375997)
[»] chr6 (3 HSPs)
chr6 (23-152)||(16985223-16985359)
chr6 (98-135)||(16795006-16795043)
chr6 (23-83)||(16779031-16779091)
[»] chr3 (3 HSPs)
chr3 (23-89)||(38942998-38943064)
chr3 (23-134)||(7055522-7055640)
chr3 (23-89)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (23-63)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 41222153 - 41222322
Alignment:
Q  1 cataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgctagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  41222153 cataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttcgaaagataaggtcgctagatt 41222252  T
Q  101 tcagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41222253 tcagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa 41222322  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 41222675 - 41222747
Alignment:
Q  168 caattaatgtaatgtaaatttattgtgacacg--atatatatcttaaatatatggtcactttataaaaatatt 238  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||||||    
T  41222675 caattaatgtaatgtaaatttattgtaacacgatatatatatcttaaatatatggtcacttcataaaaatatt 41222747  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 13375997 - 13375861
Alignment:
Q  23 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgcta-------gctttcagcaactccgaaa 115  Q
    |||| ||||||| ||||||||||||| ||||||||  |||| | ||||||| |||||| ||| ||||||| |||       |||||||||||||||||||    
T  13375997 tgccagactggttgggtgccatgactactcttcaaagattaaaaatcagtgggtttccgaagttaaggtcactaccagacagctttcagcaactccgaaa 13375898  T
Q  116 catgcaaaagttaagtattgttaatttctctatgttg 152  Q
    | |||||| |||||||||||||| || ||||||||||    
T  13375897 cttgcaaaggttaagtattgttagttgctctatgttg 13375861  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 16985359 - 16985223
Alignment:
Q  23 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgct-------agctttcagcaactccgaaa 115  Q
    |||| ||||| | |||||||||||||||||||||||||||| | |||| ||| ||||||||| |||| || ||       ||||||||||||||||||||    
T  16985359 tgccagactgtttgggtgccatgacttctcttcaagaattatacatcattgactttccaaagttaagttcactaccagacagctttcagcaactccgaaa 16985260  T
Q  116 catgcaaaagttaagtattgttaatttctctatgttg 152  Q
      |||||||||||| |||| || ||| | ||||||||    
T  16985259 tttgcaaaagttaattattattgattgccctatgttg 16985223  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 16795043 - 16795006
Alignment:
Q  98 ctttcagcaactccgaaacatgcaaaagttaagtattg 135  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  16795043 ctttcagcaactccgaaacttgcaagagttaagtattg 16795006  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 16779091 - 16779031
Alignment:
Q  23 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaa 83  Q
    |||| ||||| | ||||||||||||||||||||||| |||| | |||  ||||||||||||    
T  16779091 tgccagactgtttgggtgccatgacttctcttcaagtattagacatctatgagtttccaaa 16779031  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 38943064 - 38942998
Alignment:
Q  23 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag 89  Q
    |||||||||||| ||||||||||||||||||||||  |||||| ||||||| |||||| ||| ||||    
T  38943064 tgccggactggttgggtgccatgacttctcttcaaagattacaaatcagtgggtttccgaagttaag 38942998  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 7055522 - 7055640
Alignment:
Q  23 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataaggtcgct-------agctttcagcaactccgaaa 115  Q
    |||||||||||| ||||||||||||||||||||||| |||||| |||  |  |||||| | | ||||||||||       ||| |||||||||||| |||    
T  7055522 tgccggactggttgggtgccatgacttctcttcaagtattacaaatctctaggtttccgatgttaaggtcgctaccagacagcattcagcaactccaaaa 7055621  T
Q  116 catgcaaaagttaagtatt 134  Q
    | | |||||||||||||||    
T  7055622 cttacaaaagttaagtatt 7055640  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 38941597 - 38941663
Alignment:
Q  23 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagataag 89  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||  | ||||||||||| ||||    
T  38941597 tgccagactggttgggtgccatgacttctcttcaagtattacacatccttaagtttccaaagttaag 38941663  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 6415 - 6375
Alignment:
Q  23 tgccggactggtagggtgccatgacttctcttcaagaatta 63  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  6415 tgccggactggttgggtgccatgacttctcttcaagtatta 6375  T

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