View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7853_low_13 (Length: 239)
Name: NF7853_low_13
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7853_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41222131 - 41221908
Alignment:
| Q |
1 |
atgcattttgacacaggggtaacagatatccaaattcatagtgagggtaagattaaagacctgaagtgtatcagaatccagtacctgacattgtttaatt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41222131 |
atgcattttgacacatgggtaacagatatccaaattcatagtgagggcaagattaaagacctgaagtgtatcagaatccagtacctaacattgtttaatt |
41222032 |
T |
|
| Q |
101 |
ttggaaagcttgccat-agtaacaaacaactttgatcatgatttggtttcataataagactttgtctcaaatagattggtttcaactttctattttattc |
199 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41222031 |
ttggaaagcttgccataagtaacgaacaactttgatcatgatttggtttcataataagactttgtctcaaatagattggtttcaactttctattctattc |
41221932 |
T |
|
| Q |
200 |
taagaatttttccataatgacatg |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41221931 |
taagaatttttccataatgacatg |
41221908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 16654093 - 16654203
Alignment:
| Q |
20 |
taacagatatccaaattcatagtgagggtaagattaaagacctgaagt-gtatcagaatccagtacctgacattgtttaattttggaaagcttgccatag |
118 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||| ||||||| |||| ||||| ||||| ||||||| ||||||||| ||||| ||| |||| || || |
|
|
| T |
16654093 |
taacagatatgcaaatttatagtgagggcaagattgaagacct-aagtagtatcggaatcgagtacctaacattgtttgattttcaaaaacttgtcacag |
16654191 |
T |
|
| Q |
119 |
taacaaacaact |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16654192 |
taacaaacaact |
16654203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 16569756 - 16569680
Alignment:
| Q |
49 |
aagattaaagacctgaagtgtatcagaatccagtacctgacattgtttaattttggaaagcttgccatagtaacaaa |
125 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| || ||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
16569756 |
aagattgaagacctgaagtgtatcagaatttagtatctatcattgattaatttttgaaagcttgccaaagtaacaaa |
16569680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University