View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7853_low_3 (Length: 415)
Name: NF7853_low_3
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7853_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 22000622 - 22000226
Alignment:
| Q |
1 |
ttggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgttggattggttcctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22000622 |
ttggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgttggattggttcctc |
22000523 |
T |
|
| Q |
101 |
atgtgcaacttcggatttcttttcaccaaataaatgataactatatagcataaacacaaaaaatgaagaacagatttagtgagacactaaattagttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
22000522 |
atgtgcaacttcggatttcttttcaccaaataaatgataactatatagcagaaacacaaaaaatgaagaacaaatttagtgagacactacattagttgtt |
22000423 |
T |
|
| Q |
201 |
atcagcgaggcactgctactctttcattcagcatggagaacaaattaggtcnnnnnnnagtcattatcaatgagaattgcataattctcatttaaagcca |
300 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22000422 |
atcagtgaggcactgttactctttcattcagcatggagaacaaatttagtccttttttagtcattatcaatgagaattgcataattctcatttaaagcca |
22000323 |
T |
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| Q |
301 |
atgttttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaactggaatgatgg |
397 |
Q |
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| T |
22000322 |
atgttttttctttgttatcattgcttaattagttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttgaaactggaatgatgg |
22000226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 6723967 - 6724039
Alignment:
| Q |
53 |
acatgtgaatatggaagtaagcttatggcaatgttggattggttcctcatgtgcaacttcggatttcttttca |
125 |
Q |
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|||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
6723967 |
acatttgaagatggaagtaagcttatggtgtagttggattggttcctcatgtgcaactttagttttcttttca |
6724039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 17688232 - 17688477
Alignment:
| Q |
1 |
ttggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgttggattggttcctc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17688232 |
ttggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgttggattggttcctc |
17688331 |
T |
|
| Q |
101 |
atgtgcaacttcggatttcttttcaccaaataaatgataactatatagcataaacacaaaaaatgaagaacagatttagtgagacactaaattagttgtt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17688332 |
atgtgcaacttcggatttctttacaccaaataaatgataactatatagcagaaacacaaaaaatgaagaacagatttagtgagacactacattagttgtt |
17688431 |
T |
|
| Q |
201 |
atcagcgaggcactgctactctttcattcagcatggagaacaaatt |
246 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17688432 |
attagtgaggcactgctactctttcattcagcatggagaacaaatt |
17688477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 37983473 - 37983717
Alignment:
| Q |
1 |
ttggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgttggattggttcctc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983473 |
ttggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgttggattggttcctc |
37983572 |
T |
|
| Q |
101 |
atgtgcaacttcggatttcttttcaccaaataaatgataactatatagcataaacacaaaaaatgaagaacagatttagtgagacactaaattagttgtt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37983573 |
atgtgcaacttcggatttcttttcaccaaataaat-ataactatatagcagaaacacaaaaaatgaagaacagatttagtgagacactatattagttgtt |
37983671 |
T |
|
| Q |
201 |
atcagcgaggcactgctactctttcattcagcatggagaacaaatt |
246 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37983672 |
atcagtgaggcactgctactctttcattcagcatggagaacaaatt |
37983717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 289 - 397
Target Start/End: Original strand, 37983740 - 37983848
Alignment:
| Q |
289 |
catttaaagccaatgttttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaactg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37983740 |
catttaaagccaatgttttttgtttgttatcattgcgtgattagttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttgaaactg |
37983839 |
T |
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| Q |
389 |
gaatgatgg |
397 |
Q |
| |
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||||||||| |
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| T |
37983840 |
gaatgatgg |
37983848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 17688500 - 17688609
Alignment:
| Q |
289 |
catttaaagccaatgtttttt-gtttgttatcattgcttgattagtt-atccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaac |
386 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17688500 |
catttaaagccaatgtttttttgtttgttatcattgcttgattagtttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttgaaac |
17688599 |
T |
|
| Q |
387 |
tggaatgatg |
396 |
Q |
| |
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|||||||||| |
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|
| T |
17688600 |
tggaatgatg |
17688609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 31686553 - 31686645
Alignment:
| Q |
305 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaactggaatgatgg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||||||||||||| |||||||||| |
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| T |
31686553 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgggctgttgtcatggttatattacttagatttgaaaccggaatgatgg |
31686645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 48848458 - 48848381
Alignment:
| Q |
305 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttg |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48848458 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttg |
48848381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 1263525 - 1263602
Alignment:
| Q |
305 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
1263525 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgttgtcttggttatattacttagatttg |
1263602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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