View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7853_low_4 (Length: 357)
Name: NF7853_low_4
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7853_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 112 - 351
Target Start/End: Complemental strand, 38785079 - 38784840
Alignment:
| Q |
112 |
atgatttagaggaacaatcgaagtcctttatgtaataattcggattgcctctagtttacctccattagacctcaactcaacttctatcaaatgtaatgca |
211 |
Q |
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| T |
38785079 |
atgatttagaggaacaatcgaagtcctttatgtaataattcggattgcctctagtttacttccattagacctcaactcaacttctatcaaatgtaatgca |
38784980 |
T |
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| Q |
212 |
atgcaatgtaaaatctctcgcatcatgtataggagaactgaaagtgaagctgaattttatgactgtcgcaactatgtataccttacttttgaacattaaa |
311 |
Q |
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| T |
38784979 |
atgcaatgtaaaatctctcgcatcatgtataggagaactgaaagtgaagctgaattttatgactgtcgcaactatgtataccttacttttgaacattaaa |
38784880 |
T |
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| Q |
312 |
cttgcttctacatatcatatcatcatgtgaagccataaac |
351 |
Q |
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| T |
38784879 |
cttgcttctacatatcatatcatcatgtgaagccataaac |
38784840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 38785594 - 38785489
Alignment:
| Q |
13 |
aatattagtattaaattgatcagaacagtgcatgaattattatctcttttaattccacctggaaatgcagggtggaacgggaacattccacctactatta |
112 |
Q |
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| T |
38785594 |
aatattagtattaaattgatcagaacagtgcatgaattattatctcttttaattccacctggaaatgcagagtggaacgggaacattccacctactatta |
38785495 |
T |
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| Q |
113 |
tgattt |
118 |
Q |
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|||||| |
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| T |
38785494 |
tgattt |
38785489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 52929631 - 52929696
Alignment:
| Q |
250 |
tgaaagtgaagctgaattttatgactgtcgcaactatg-tataccttacttttgaacattaaactt |
314 |
Q |
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|||| ||||| ||||||||||| || ||| ||| |||| |||||||||||||| |||||||||||| |
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| T |
52929631 |
tgaatgtgaaactgaattttataaccgtcacaattatggtataccttacttttcaacattaaactt |
52929696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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