View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7853_low_6 (Length: 304)

Name: NF7853_low_6
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7853_low_6
NF7853_low_6
[»] chr1 (1 HSPs)
chr1 (1-294)||(51366956-51367249)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 51367249 - 51366956
Alignment:
Q  1 cagtaacaactttttgtgttcctttgttgagggaaaagaaactgtggcagcttaagttgtggaaatgggaagtgatgattcttgttctaatatgtggtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51367249 cagtaacaactttttgtgttcctttgttgagggaaaagaaactgtggcagcttaagttgtggaaatgggaagtgatgattcttgttctaatatgtggtag 51367150  T
Q  101 attggtttctgattgggttattaggattgctgtgttttgtattgaaaggaatttcctattgagaaagagggttctttattttgtgtatggtgtgaggaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51367149 attggtttctgattgggttattaggattgctgtgttttgtattgaaaggaatttcctattgagaaagagggttctttattttgtgtatggtgtgaggaaa 51367050  T
Q  201 gctgtgcaaaattgtgtttggttagggcttgttttgattgcatggcattttctgtttgataagagagttcaaagagagacaaacagtgatgtcc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51367049 gctgtgcaaaattgtgtttggttagggcttgttttgattgcatggcattttctgtttgataagagagttcaaagagagacaaacagtgatgtcc 51366956  T

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