View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7853_low_7 (Length: 292)

Name: NF7853_low_7
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7853_low_7
NF7853_low_7
[»] chr3 (20 HSPs)
chr3 (82-273)||(10891412-10891603)
chr3 (82-273)||(11146626-11146817)
chr3 (82-280)||(11157792-11157990)
chr3 (82-273)||(8863392-8863583)
chr3 (82-273)||(11128801-11128992)
chr3 (8-85)||(11157665-11157742)
chr3 (9-85)||(11128675-11128751)
chr3 (9-85)||(11146500-11146576)
chr3 (7-85)||(8863633-8863711)
chr3 (14-81)||(10891657-10891724)
chr3 (31-73)||(9841214-9841256)
chr3 (31-73)||(10034359-10034401)
chr3 (31-73)||(10129281-10129323)
chr3 (31-73)||(10361472-10361514)
chr3 (31-73)||(10431712-10431754)
chr3 (31-73)||(10665822-10665864)
chr3 (31-68)||(10091155-10091192)
chr3 (31-68)||(10198037-10198074)
chr3 (31-64)||(11244194-11244227)
chr3 (24-73)||(13853125-13853174)
[»] scaffold0083 (1 HSPs)
scaffold0083 (31-73)||(55273-55315)
[»] chr8 (1 HSPs)
chr8 (32-73)||(11487385-11487426)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 10891603 - 10891412
Alignment:
Q  82 taaagacggaatgctattgagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacc 181  Q
    ||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  10891603 taaagacggaatgctatcgagtctcaagaattgaagacatgtgctgctcaaaatcatttggggaagggagaatattgtatcaaacaaacgtaccgatacc 10891504  T
Q  182 cattgcagtagacaaggcaaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattga 273  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  10891503 cgttgcagtagacaaggcaaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctataacttttattga 10891412  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 11146626 - 11146817
Alignment:
Q  82 taaagacggaatgctattgagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacc 181  Q
    |||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  11146626 taaagacggaattctactgagtctcaagaatcgaagacatgtgctgctcaaaatcatttggggaagggagaatattgtatcaaagaaatataccgatacc 11146725  T
Q  182 cattgcagtagacaaggcaaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattga 273  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||    
T  11146726 gattgcagtagacaaggcaaatcactctcaacaaacggccattgattatttgtagaatgtaaatctccccaaatatctatagcttttattga 11146817  T

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Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 82 - 280
Target Start/End: Original strand, 11157792 - 11157990
Alignment:
Q  82 taaagacggaatgctattgagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacc 181  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||    
T  11157792 taaagacggaatgctatcgagtttcaagaatcgaagacatgtgctgctcaaaatcatttggggaagggagaacattgtatcaaagaaacatactgatacc 11157891  T
Q  182 cattgcagtagacaaggcaaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattgatggccat 280  Q
     ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  11157892 gattgcagaagacaaggcaaatcactctgaacaaacggccattgattatttgtagaatgtaaatctcccgaaatatctatagcttttattgagggccat 11157990  T

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Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 8863583 - 8863392
Alignment:
Q  82 taaagacggaatgctattgagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacc 181  Q
    |||||||||||  || | ||||||||||| |  |||||| ||||||||||||||||||| |||||| ||||||||| ||||||| |||| ||  | ||||    
T  8863583 taaagacggaacactgtggagtgtcaagaatttaagacaagtgctgctcaaaatcattttgggaagagagaatattgtatcaaaaaaacgtagtgttacc 8863484  T
Q  182 cattgcagtagacaaggcaaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattga 273  Q
    |||||||||||||| ||| | ||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||    
T  8863483 cattgcagtagacatggcgagtcactctcaacaaacggccattgagtctctgaagaatgtaaatctcccgaaatatctatttcttttattga 8863392  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 11128801 - 11128992
Alignment:
Q  82 taaagacggaatgctattgagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacc 181  Q
    |||||||||||  || | |||| |||||| |  |||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||  |  | |||     
T  11128801 taaagacggaacactgtggagtttcaagaatttaagacaagtgctgctcaaaatcattttgggaagagagaatattgtatcaaagaaacgcagggctaca 11128900  T
Q  182 cattgcagtagacaaggcaaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattga 273  Q
    |||||||||||||| ||  ||||| ||||||||||||||||| || | |||||||||| ||||  |||||||| ||||||||||||||||||    
T  11128901 cattgcagtagacatggggaatcactctcaacaaacggccatcgagtctctgtagaatctaaacttcccgaaaaatctatttcttttattga 11128992  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 11157665 - 11157742
Alignment:
Q  8 ctaaaatcaactccaaaagcgacgtgtaattgctccacgtttctggaggtaggaatgataacttcttgcaattataaa 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||    
T  11157665 ctaaagtcaactccaaaagcgacgtgtaattgctccacgtttccggaggcatgaatgataacttctcgcaattataaa 11157742  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 11128675 - 11128751
Alignment:
Q  9 taaaatcaactccaaaagcgacgtgtaattgctccacgtttctggaggtaggaatgataacttcttgcaattataaa 85  Q
    |||| |||||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||||| |||||||||||    
T  11128675 taaagtcaactccaaaagcgatgtgtaattgctccatgtttccggaggcatgaatgataacttctcgcaattataaa 11128751  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 11146500 - 11146576
Alignment:
Q  9 taaaatcaactccaaaagcgacgtgtaattgctccacgtttctggaggtaggaatgataacttcttgcaattataaa 85  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||| |||| ||||||    
T  11146500 taaactcaactccaaaagcgatgtgtaattgctccacgtttccggaggcatgaatgataacttctcgcaactataaa 11146576  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 8863711 - 8863633
Alignment:
Q  7 tctaaaatcaactccaaaagcgacgtgtaattgctccacgtttctggaggtaggaatgataacttcttgcaattataaa 85  Q
    |||||| |||| | ||||||||| |||||||||||||||||||||||||| | |||||||| |||||  ||||||||||    
T  8863711 tctaaagtcaaatgcaaaagcgatgtgtaattgctccacgtttctggaggcatgaatgatagcttctcacaattataaa 8863633  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 10891724 - 10891657
Alignment:
Q  14 tcaactccaaaagcgacgtgtaattgctccacgtttctggaggtaggaatgataacttcttgcaatta 81  Q
    ||||||||||||| || ||||| |||||||||||||||| ||| | ||||||||| ||||||||||||    
T  10891724 tcaactccaaaagagatgtgtagttgctccacgtttctgaaggcatgaatgataaattcttgcaatta 10891657  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 9841256 - 9841214
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  9841256 gtgtaattgctccacgtttcaggaggtaggaaggataaattct 9841214  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 10034401 - 10034359
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  10034401 gtgtaattgctccacgtttcaggaggtaggaaggataaattct 10034359  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 10129323 - 10129281
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  10129323 gtgtaattgctccacgtttcaggaggtaggaaggataaattct 10129281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 10361472 - 10361514
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  10361472 gtgtaattgctccacgtttcaggaggtaggaaggataaattct 10361514  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 10431712 - 10431754
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  10431712 gtgtaattgctccacgtttcaggaggtaggaaggataaattct 10431754  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 10665864 - 10665822
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  10665864 gtgtaattgctccacgtttcaggaggtaggaaggataaattct 10665822  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 10091192 - 10091155
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataa 68  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  10091192 gtgtaattgctccacgtttcaggaggtaggaaggataa 10091155  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 10198074 - 10198037
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataa 68  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  10198074 gtgtaattgctccacgtttcaggaggtaggaaggataa 10198037  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 11244194 - 11244227
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatg 64  Q
    |||||||||||||||||||| |||||||||||||    
T  11244194 gtgtaattgctccacgtttcaggaggtaggaatg 11244227  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 13853125 - 13853174
Alignment:
Q  24 aagcgacgtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||| |||||||||||||| ||||| ||||| ||||||||||| ||||    
T  13853125 aagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattct 13853174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 55273 - 55315
Alignment:
Q  31 gtgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  55273 gtgtaattgctccacgtttcaggaggtaggaaggataaattct 55315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 11487426 - 11487385
Alignment:
Q  32 tgtaattgctccacgtttctggaggtaggaatgataacttct 73  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  11487426 tgtaattgctccacgtttcaggaggaaggaatgataaattct 11487385  T

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