View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7853_low_8 (Length: 268)
Name: NF7853_low_8
Description: NF7853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7853_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 47262004 - 47261763
Alignment:
| Q |
19 |
tgtatctgtaaaatttcctaagtttttgttgtcctatcctatgctattcttttttagtgttttaccatgaaattctcctcaactaattatattctaacct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262004 |
tgtatctgtaaaatttcctaagtttttgttgtcctatcctatgctattcttttttagtgttttaccatgaaattctcctcaactaattatattctaacct |
47261905 |
T |
|
| Q |
119 |
gatagagtattttgacttgaaattgatagtttaatttctaaaattaacgaaatgattctgataggtgcttgggtataattcctaaatctaatcaagtaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47261904 |
aatagagtattttgacttgaaattgatagtttaatttctaaaattaacgaaatgattctgataggtgcttgggtataattcctaaatctaatcaagtaga |
47261805 |
T |
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| Q |
219 |
atgggatgctcggtggagaatttaagtggcttggttcttctc |
260 |
Q |
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| T |
47261804 |
atgggatgctcggtggagaatttaagtggcttggttcttctc |
47261763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 37483129 - 37483180
Alignment:
| Q |
209 |
atcaagtagaatgggatgctcggtggagaatttaagtggcttggttcttctc |
260 |
Q |
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| T |
37483129 |
atcaagtagtatgggatgtttggtggagtatttaagtggcttggttcttctc |
37483180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 46288457 - 46288495
Alignment:
| Q |
219 |
atgggatgctcggtggagaatttaagtggcttggttctt |
257 |
Q |
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| T |
46288457 |
atgggatgctcggtggagtatttaagtggcttggttctt |
46288495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 37615450 - 37615405
Alignment:
| Q |
213 |
agtagaatgggatgctcggtggagaatttaagtggcttggttcttc |
258 |
Q |
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||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
37615450 |
agtagtatgagatgctcggtggagtatttaagtggcttggttcttc |
37615405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 846387 - 846342
Alignment:
| Q |
213 |
agtagaatgggatgctcggtggagaatttaagtggcttggttcttc |
258 |
Q |
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||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
846387 |
agtagtatgagatgctcggtggagtatttaagtggcttggttcttc |
846342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 34783726 - 34783678
Alignment:
| Q |
210 |
tcaagtagaatgggatgctcggtggagaatttaagtggcttggttcttc |
258 |
Q |
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|||||||| || ||||| | |||||| |||||||||||||||||||||| |
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| T |
34783726 |
tcaagtagcataggatgtttggtggaaaatttaagtggcttggttcttc |
34783678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 8422919 - 8422880
Alignment:
| Q |
219 |
atgggatgctcggtggagaatttaagtggcttggttcttc |
258 |
Q |
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||||||||||| |||||| ||||||||||||||||||||| |
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| T |
8422919 |
atgggatgctcagtggagtatttaagtggcttggttcttc |
8422880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 8422744 - 8422700
Alignment:
| Q |
214 |
gtagaatgggatgctcggtggagaatttaagtggcttggttcttc |
258 |
Q |
| |
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|||| |||||||| ||||||||| ||||||||||||| ||||||| |
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| T |
8422744 |
gtagtatgggatgttcggtggagtatttaagtggcttagttcttc |
8422700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 35640785 - 35640740
Alignment:
| Q |
213 |
agtagaatgggatgctcggtggagaatttaagtggcttggttcttc |
258 |
Q |
| |
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||||| |||||||||| ||||||| | ||||||||||||||||||| |
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| T |
35640785 |
agtagtatgggatgcttggtggagtacttaagtggcttggttcttc |
35640740 |
T |
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