View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7854_high_1 (Length: 415)
Name: NF7854_high_1
Description: NF7854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7854_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 43089146 - 43089528
Alignment:
| Q |
16 |
atgaagggtcatctccaaaatctgaaattgatgtattgcttcttctagaccttgattttggtcttccagtatcaacttctactatttttggacttccaat |
115 |
Q |
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| T |
43089146 |
atgaagggtcatctccaaaatctgaaattgatgtattgcttcttctagaccttgattttggtcttccagtatcaacttctactatttttggacttccaat |
43089245 |
T |
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| Q |
116 |
atcataactgttcattgtagcatcaaaagatgatgataatcttctgctgtgaataggaattgaagctgtaaactcgttcctgttactctcattgtgattg |
215 |
Q |
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| T |
43089246 |
atcataactgttcattgtagcatcaaaagatgatgataatcttctgctgtgaataggaattgaagctgtgtactcgttcctgttactctcattgtgatta |
43089345 |
T |
|
| Q |
216 |
tacctttcctgcaaaataaaaatcataagaaatgtaaatattcaagtgatactaggaattagaatatgagatctgtttatgtattttaccgtggatcttc |
315 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43089346 |
tacctttcctgcaaaataacaatcataagaaatgtaaatattcaagtgatactaggaattaaaatatgagatctgtttatgtattttaccgtggatcttc |
43089445 |
T |
|
| Q |
316 |
tagcttgtgtttgaaatctgttatttgtttcattctttgtgtttatgatgagtccacgagatttatgagaccttactgttgct |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43089446 |
tagcttgtgtttgaaatctgttatttgtttcattctttgtgcttatgatgagtccacgagatttatgagaccttactgttgct |
43089528 |
T |
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