View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7854_high_2 (Length: 412)

Name: NF7854_high_2
Description: NF7854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7854_high_2
NF7854_high_2
[»] chr4 (3 HSPs)
chr4 (7-397)||(43560317-43560722)
chr4 (127-165)||(21173782-21173820)
chr4 (124-177)||(24359816-24359869)
[»] chr1 (5 HSPs)
chr1 (124-251)||(51044468-51044595)
chr1 (126-190)||(16138908-16138972)
chr1 (124-210)||(37962865-37962951)
chr1 (126-190)||(16127398-16127462)
chr1 (6-50)||(51044183-51044227)
[»] chr3 (2 HSPs)
chr3 (124-251)||(34626631-34626758)
chr3 (126-218)||(44674038-44674130)
[»] chr7 (1 HSPs)
chr7 (130-210)||(45676052-45676132)
[»] chr5 (1 HSPs)
chr5 (114-177)||(2590833-2590896)
[»] chr2 (4 HSPs)
chr2 (124-188)||(27172787-27172851)
chr2 (121-188)||(28205955-28206022)
chr2 (116-179)||(42789005-42789068)
chr2 (116-197)||(37881847-37881928)
[»] chr8 (8 HSPs)
chr8 (127-208)||(5960363-5960444)
chr8 (116-177)||(41351226-41351287)
chr8 (127-182)||(5843121-5843176)
chr8 (275-304)||(32297706-32297735)
chr8 (127-179)||(5849866-5849918)
chr8 (127-179)||(5921235-5921287)
chr8 (127-179)||(5949127-5949179)
chr8 (127-179)||(5984655-5984707)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 43560722 - 43560317
Alignment:
Q  7 tttggtgttggttgctggagttctgttcctaaacaagctggtaagtaatttgttaaaatcatgttacattcttcaaaactaagagtctaacatggttgat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560722 tttggtgttggttgctggagttctgttcctaaacaagctggtaagtaatt-gttaaaatcatgttacattcttcaaaactaagagtctaacatggttgat 43560624  T
Q  107 gaatttcttcaggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaaga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560623 gaatttcttcaggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaaga 43560524  T
Q  207 agaggatcttataatcagtcttcatgaagtccttggaaatagg----------------tatatgattcaacatatatcattttgtgcatgtttggaatc 290  Q
    |||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||    
T  43560523 agaggatcttataatcagtcttcatgaagtccttggaaataggtaacatcatatacgaatatatgattcaacatatatcattttgtgcatgtttggaatc 43560424  T
Q  291 acgatgagtttgactaaattatcacagtcctgtaatatagctttaacaaaaattacaaggactccctgtgattttgtcaaattcactgtgaatccaaaca 390  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43560423 accatgagtttgactaaattatcatagtcctgtaatatagctttaacaaaaattacgaggactccctgtgattttgtcaaattcactgtgaatccaaaca 43560324  T
Q  391 tatttct 397  Q
    |||||||    
T  43560323 tatttct 43560317  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 21173782 - 21173820
Alignment:
Q  127 agatgtggaaagagttgtagattgagatggataaactat 165  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  21173782 agatgtggaaaaagttgtagattgagatggctaaactat 21173820  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 24359869 - 24359816
Alignment:
Q  124 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgat 177  Q
    |||||||||||||| |||||||| || |||||||| || || ||||||||||||    
T  24359869 caaagatgtggaaaaagttgtaggttaagatggatcaattacttgaggcctgat 24359816  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 51044468 - 51044595
Alignment:
Q  124 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttataatca 223  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||| ||||    
T  51044468 caaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaagagaggaatgttctcaaaacaagaggaagatcttatcatca 51044567  T
Q  224 gtcttcatgaagtccttggaaataggta 251  Q
     |||||||||||  ||||||||||||||    
T  51044568 atcttcatgaagcacttggaaataggta 51044595  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 16138972 - 16138908
Alignment:
Q  126 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaa 190  Q
    ||||||||||||||||||||||||||||||||| |||||||| |  |||||| | ||||||||||    
T  16138972 aagatgtggaaagagttgtagattgagatggattaactatttaaaacctgatattaagagaggaa 16138908  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 37962865 - 37962951
Alignment:
Q  124 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagag 210  Q
    ||||| ||||| |||||||| || || ||||||||||| || |||||||||||||| || ||||||   ||||||||||||||||||    
T  37962865 caaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaaagaggagcattctcacaacaagaagag 37962951  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 16127462 - 16127398
Alignment:
Q  126 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaa 190  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||  ||||| | ||||||||||    
T  16127462 aagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaa 16127398  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 51044183 - 51044227
Alignment:
Q  6 gtttggtgttggttgctggagttctgttcctaaacaagctggtaa 50  Q
    |||||||||||| || |||||||| |||||||||| |||||||||    
T  51044183 gtttggtgttggatgttggagttcagttcctaaactagctggtaa 51044227  T

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Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 34626758 - 34626631
Alignment:
Q  124 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttataatca 223  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| ||||||| || |||||||| ||||    
T  34626758 caaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaagagaggaatgttctcaaaacaagaggaagatcttattatca 34626659  T
Q  224 gtcttcatgaagtccttggaaataggta 251  Q
     |||||||||||  ||||||||||||||    
T  34626658 atcttcatgaagcacttggaaataggta 34626631  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 44674038 - 44674130
Alignment:
Q  126 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttat 218  Q
    ||||||||| |||||||| ||||||||||||||||| ||  | || |||||| | ||||||||||  ||| |  |||||||||| ||||||||    
T  44674038 aagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaacttcactgaacaagaagatgatcttat 44674130  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 45676132 - 45676052
Alignment:
Q  130 tgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagag 210  Q
    ||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||||||   |||||| | |||||||||    
T  45676132 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagaggagcattctcagagcaagaagag 45676052  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 2590833 - 2590896
Alignment:
Q  114 ttcaggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgat 177  Q
    |||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||    
T  2590833 ttcagggcttcaaaggtgtggtaagagttgtaggttgagatggataaattatttaaggcctgat 2590896  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 27172851 - 27172787
Alignment:
Q  124 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagagg 188  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||| || ||| |||| |||||    
T  27172851 caaagatgtggaaagagttgcagattaagatggacaaactatttgagaccagatctaaaaagagg 27172787  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 28205955 - 28206022
Alignment:
Q  121 cttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagagg 188  Q
    |||||| ||||||| || |||||| | ||||||||||| || ||| | ||||||||||||||||||||    
T  28205955 cttcaacgatgtgggaaaagttgtcgtttgagatggatcaattatcttaggcctgatttaaagagagg 28206022  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 42789068 - 42789005
Alignment:
Q  116 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 179  Q
    ||||||| || ||||||||||| ||||| || |||||||||||||| ||||| || ||||||||    
T  42789068 caggactgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgattt 42789005  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 37881928 - 37881847
Alignment:
Q  116 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctc 197  Q
    |||| |||||||| ||||| ||||||||| |  |  |||||| |||||||||||| |||||| | |||||||||| ||||||    
T  37881928 caggtcttcaaaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctc 37881847  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 5960444 - 5960363
Alignment:
Q  127 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaag 208  Q
    ||||||||||||||||||||||| ||||||||||| ||| | || |||||||| ||  | ||||  ||||| ||||||||||    
T  5960444 agatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaag 5960363  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 41351287 - 41351226
Alignment:
Q  116 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgat 177  Q
    |||| |||||||| ||||| ||||||||| |||| ||||||||||| |||||||| ||||||    
T  41351287 cagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgat 41351226  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 5843176 - 5843121
Alignment:
Q  127 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaa 182  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | || |||||||||||    
T  5843176 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaa 5843121  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 32297706 - 32297735
Alignment:
Q  275 gtgcatgtttggaatcacgatgagtttgac 304  Q
    ||||||||||||||||||||||||||||||    
T  32297706 gtgcatgtttggaatcacgatgagtttgac 32297735  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 5849918 - 5849866
Alignment:
Q  127 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 179  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | || ||||||||    
T  5849918 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgattt 5849866  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 5921287 - 5921235
Alignment:
Q  127 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 179  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
T  5921287 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 5921235  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 5949179 - 5949127
Alignment:
Q  127 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 179  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
T  5949179 agatgtggaaagagttgaagattaagatggataaattatctaagacctgattt 5949127  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 5984707 - 5984655
Alignment:
Q  127 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 179  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
T  5984707 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 5984655  T

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