View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_high_1 (Length: 1125)
Name: NF7855_high_1
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 881; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 32 - 1049
Target Start/End: Complemental strand, 31809343 - 31808326
Alignment:
| Q |
32 |
gtgattattcagattaattgatattacctcgtaaagcttagagagacgaggcgctgaactggaaacacgggctttctttcttcctctggagcccgttgaa |
131 |
Q |
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| T |
31809343 |
gtgattattcagattaattgatattacctcgtaaagcttcgagagacgaggcgctgaactggaaacacgggctttctttcttcctctggagcccgttgaa |
31809244 |
T |
|
| Q |
132 |
gtggacttgggtttgggcttgggctttgaactggtcgaactcaacgaacgagttttgggagcattttcttcgtcatcagatgagagaacaatgacggagt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809243 |
gtggacttgggtttgggcttgggctttgaactggtcgaactcaacgaacgagttttgggagcattttcttcgtcatcagatgagagaacaatgacggagt |
31809144 |
T |
|
| Q |
232 |
ttcgcttcgccatgttgtagaaccgttttcaaatgaacaccgtcgtcgattgctgcttcgccgtgaaacgaaatcacggtgagaaaccccacatggcggg |
331 |
Q |
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| T |
31809143 |
ttcgcttcgccatgttgtagaaccgttttcaaatgaacaccgtcgtcgattgctgcttcgccgtgaaacgaaatcacggtgagaaaccccacatggcggg |
31809044 |
T |
|
| Q |
332 |
ttttgaagggcaaaaacgagaaagtgattccctttttggtgggaattggggatgagagaggcttagaggagaagcctttggcattgctgggtgggtccct |
431 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809043 |
ttttgaagggcaaaaacgagaaagtgattcactttttggtgggaattgggaatgagagtggcttagaggagaagcctttggcattgctgggtgggtccct |
31808944 |
T |
|
| Q |
432 |
ttatttgggccttattgtaacttctccgcccacgtgttaggcccaaatcttaaaatgtcacgtaaacattgtccgcttaacctaaccaatctccctcgaa |
531 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||| ||||||||||| | |
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| T |
31808943 |
ttctttgggccttattgtaacttctccgcccacgtgttaggcccaaatcttagaatgtcacataaacactgcacgcttaacctaactaatctccctcgga |
31808844 |
T |
|
| Q |
532 |
caatctatgaggcatgtaaggtaggttgttacctcccaaccgaatcttttctatacgtataacggtatataagctggaatcgaacccttaactatatgct |
631 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| || |
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| T |
31808843 |
caatctatgaggcacgtaaggtaggttgttacctcccaaccgaatcttttccatacgtataacgatatataagctggaatcgaaccactaactatatact |
31808744 |
T |
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| Q |
632 |
taaagaactcaaatcccttacatcaactaaattatgctcatggcaactaccatgaacaaattctactaatgagtaaataaataaatcgacttgtacttnn |
731 |
Q |
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| T |
31808743 |
taaagaactcaaatctcttacaccaactaaattatgctcatggcaactaccatgaacaaattctactaatgagtaaataaataaatcgacttgtacttaa |
31808644 |
T |
|
| Q |
732 |
nnnnngtgaaatacatcattgaaattatgaagcgttagtcaaaatcttgtctttattaacttttgtcattaaggactagaacgagacatgttaattgaga |
831 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31808643 |
aaaaagagaaatacatcattgaaattatgaagcgttagtcaaaatcttgtctttattaacttttgtcattaaggactagaacgagacatgttaattgaga |
31808544 |
T |
|
| Q |
832 |
atacaaccgctctatgttgatctcatatgaatggtatcgcccccatgacatagttttcctttcatgtcggtattttagtaattagttcatgctcaattac |
931 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31808543 |
atacaaccgctctatgttgatctcatatgaatgttatcgcccccatggcatagttttcctttcatgtcggtattttagtaattagttcatgcacaattac |
31808444 |
T |
|
| Q |
932 |
tattatcaacaaatttgacatttaaatgacggctaatatggcttatggatcaacatataatgtgacaagtctagttagcatgtcatttcataacatctaa |
1031 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31808443 |
tattattaacaaatttgacatttaaatgacggctaatatggttgttggatcaacatataatgtgacaagtctagttagcatgtcatttcataacatctaa |
31808344 |
T |
|
| Q |
1032 |
caattgaagttaacatag |
1049 |
Q |
| |
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|||||||||||| ||||| |
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| T |
31808343 |
caattgaagttatcatag |
31808326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1063 - 1108
Target Start/End: Complemental strand, 31808330 - 31808285
Alignment:
| Q |
1063 |
catagattaattttaatgacattttataatctcagctgtatattgc |
1108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31808330 |
catagattaattttaatgacattttataatctcagctgtatattgc |
31808285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1053 - 1088
Target Start/End: Complemental strand, 31808201 - 31808166
Alignment:
| Q |
1053 |
ttgaagttaacatagattaattttaatgacatttta |
1088 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31808201 |
ttgaagttaacatagattaattttaatgacatttta |
31808166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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