View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_high_11 (Length: 261)
Name: NF7855_high_11
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 22812950 - 22813201
Alignment:
| Q |
7 |
tattgggaggaggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggt |
106 |
Q |
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| T |
22812950 |
tattgggagggggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacaattgaatggcgaagataaatgt |
22813049 |
T |
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| Q |
107 |
ttggtatggattgaagatgaaagttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttga--------nnnnnnnnnnnattctgc |
198 |
Q |
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| T |
22813050 |
ttggtatggattgaagatgaaagttcaatgttacctttcatgaagattgcacgtgcctgtcaattttttcttgatttttttctttttttttttattctgc |
22813149 |
T |
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| Q |
199 |
aattacacgcgtggacattactctcctttttaattaaaataattacacaggt |
250 |
Q |
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| T |
22813150 |
aattacacgcgtggatattactctcctttttaattaaaataattacacaggt |
22813201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 39688726 - 39688486
Alignment:
| Q |
7 |
tattgggaggaggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggt |
106 |
Q |
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| T |
39688726 |
tattgggatgaggaggaggtattggtttaagtttggtacggattgaagatgatagggtttctggtaaattaatagacaattgaatggcgaagataaatgt |
39688627 |
T |
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| Q |
107 |
ttggtatggattgaagat--gaaagttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttgannnnnnnnnnnattctgcaattac |
204 |
Q |
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| T |
39688626 |
ttggtatggattgaagatgagaaagttcaatgttacctttcatgaagattgcacgtgcctgtcaattttttttt-----ttttttttcttctgcaattac |
39688532 |
T |
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| Q |
205 |
acgcgtggacattactctcctttttaattaaaataattacacaggt |
250 |
Q |
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| T |
39688531 |
acgcgtggatattactctcctttttaattaaaataattacacaggt |
39688486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 2214712 - 2214877
Alignment:
| Q |
15 |
ggaggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatg |
114 |
Q |
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| T |
2214712 |
ggaggaggaggtattggtttaagtttggtatggattgaagatgatagtgtttctggtaaattaatagacgattgaatggcgaagataaaggtttggtatg |
2214811 |
T |
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| Q |
115 |
gattgaagatgaaagttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttga |
180 |
Q |
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| T |
2214812 |
gattcaagatgaaagttcaatgttatctttcatgaagattgcacgtgcctgccaattttttcttga |
2214877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 21844043 - 21844194
Alignment:
| Q |
28 |
ttggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatggattgaagatgaa |
127 |
Q |
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| T |
21844043 |
ttggtttttgtttggtatggatttaagataatagggtttttggaaaattaatggaagattgaatgaagaagataaatgtttggtatggattgaaggtgaa |
21844142 |
T |
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| Q |
128 |
agttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttga |
180 |
Q |
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| T |
21844143 |
agttcaatgttacctttcatgaagatt-catgtgcctgccaatttgtccttga |
21844194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 21844215 - 21844271
Alignment:
| Q |
192 |
attctgcaattacacgcgtggacattactctcctttttaattaaaataattacacag |
248 |
Q |
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||| ||||||||||||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
21844215 |
attttgcaattacacgcatggatattactctccttttcaattaaaaaaattacacag |
21844271 |
T |
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