View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7855_high_6 (Length: 369)

Name: NF7855_high_6
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7855_high_6
NF7855_high_6
[»] chr4 (1 HSPs)
chr4 (1-369)||(25793688-25794056)
[»] chr3 (15 HSPs)
chr3 (264-369)||(10377598-10377703)
chr3 (247-337)||(9996272-9996362)
chr3 (247-337)||(10217289-10217379)
chr3 (1-73)||(10221357-10221429)
chr3 (4-83)||(10377883-10377962)
chr3 (208-294)||(10440952-10441038)
chr3 (289-351)||(10658561-10658623)
chr3 (53-94)||(10136866-10136907)
chr3 (32-90)||(10075294-10075350)
chr3 (218-280)||(13845623-13845685)
chr3 (207-314)||(10532452-10532562)
chr3 (227-267)||(10667719-10667759)
chr3 (60-94)||(10134207-10134241)
chr3 (218-258)||(10264479-10264519)
chr3 (227-267)||(10521475-10521515)
[»] chr5 (2 HSPs)
chr5 (247-337)||(26796760-26796850)
chr5 (1-73)||(26816715-26816787)
[»] chr8 (1 HSPs)
chr8 (218-307)||(11488796-11488888)
[»] chr2 (1 HSPs)
chr2 (220-253)||(26910597-26910630)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 25793688 - 25794056
Alignment:
Q  1 atcagcaacacacctcatgatgtgcaacctgctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaaggtaatcataaccatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793688 atcagcaacacacctcatgatgtgcaacctgctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaaggtaatcataaccatga 25793787  T
Q  101 ccgtgccatcacgatgttgattttatttatctaactatttatagatatttagttttaacaatccaactgttcaattatcttaacgaacatatgtctatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793788 ccgtgccatcacgatgttgattttatttatctaactatttatagatatttagttttaacaatccaactgttcaattatcttaacgaacatatgtctatat 25793887  T
Q  201 tgccgccttttcaggagaggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793888 tgccgccttttcaggagaggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaa 25793987  T
Q  301 aatgtttgagaggagcaaattggttgtcattgccacaggattggatttactaagttattcagtttgtat 369  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25793988 aatgtttgagaggagcaaattggttgtaattgccacaggattggatttactaagttattcagtttgtat 25794056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 10377703 - 10377598
Alignment:
Q  264 aagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccacaggattggatttactaagttattcagt 363  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  ||  ||||||||||||||||| ||||||||  | ||||||||    
T  10377703 aagtggggcatgttattgtaatgattcttcttgtaaaaatatttgagaggagcaaaacggccgtcattgccacaggattagatttacttgggtattcagt 10377604  T
Q  364 ttgtat 369  Q
     |||||    
T  10377603 ctgtat 10377598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 9996272 - 9996362
Alignment:
Q  247 tgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccaca 337  Q
    ||||||| ||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||  || |||||||||||||||||    
T  9996272 tgatgaattgaaaacaaaagtggaccatgttattgtaatgattcttcctgtaaaaatgtttgagaggagtgaaatggttgtcattgccaca 9996362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 10217289 - 10217379
Alignment:
Q  247 tgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccaca 337  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||   || |||||||||||||||||    
T  10217289 tgatgaattgaaaacaaaagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagaggaatgaaatggttgtcattgccaca 10217379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10221357 - 10221429
Alignment:
Q  1 atcagcaacacacctcatgatgtgcaacctgctgtcgaccgtgcccttaaaggatcctctctctttggaatgt 73  Q
    |||| |||||||||||||||||||  | || |||||||||||||||||||||||||||||||||| |||||||    
T  10221357 atcaacaacacacctcatgatgtgtcagcttctgtcgaccgtgcccttaaaggatcctctctcttcggaatgt 10221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 10377962 - 10377883
Alignment:
Q  4 agcaacacacctcatgatgtgcaacctgctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaa 83  Q
    |||||||||||||||||| ||  |||| |||| |||||||| |||||||| ||||||||||| |||||||||||||||||    
T  10377962 agcaacacacctcatgatatgtcaccttctgttgaccgtgcgcttaaagggtcctctctcttcggaatgttcgctttgaa 10377883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 10441038 - 10440952
Alignment:
Q  208 ttttcaggagaggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttct 294  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||| |||| | |||||| |||||||| | ||| |||||||||||    
T  10441038 ttttcaggaaaggcctaagtggatgacaataagctcacttgatgaattgaagaaaaaagtggggcatgtcactgtgatgattcttct 10440952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 10658561 - 10658623
Alignment:
Q  289 tcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccacaggattggatttact 351  Q
    |||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  10658561 tctttttgtaaaaatgtttgagaggagcaaaatggttgtcactgccacaggattagatttact 10658623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 10136866 - 10136907
Alignment:
Q  53 gatcctctctctttggaatgttcgctttgaaggtaatcataa 94  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  10136866 gatcctctctctttggaatgtttgctttgaaggtaatcataa 10136907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 10075294 - 10075350
Alignment:
Q  32 ctgtcgaccgtgcccttaaaggatcctctctctttggaatgttcgctttgaaggtaatc 90  Q
    |||| |||||| ||||||||||||||||||||  ||||||||| |||||||||||||||    
T  10075294 ctgtggaccgttcccttaaaggatcctctctc--tggaatgtttgctttgaaggtaatc 10075350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 13845685 - 13845623
Alignment:
Q  218 aggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttatt 280  Q
    |||||||||||||||||||||||| | |||| |||| |||| |||||||| ||| ||||||||    
T  13845685 aggcctaagtggatgaaaatcagcccgcttgttgaattgaagacaaaagtggggaatgttatt 13845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 10532452 - 10532562
Alignment:
Q  207 cttttcaggagaggcctaa---gtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaat 303  Q
    |||| ||||||||||||||   |||||| |||||| | ||| |||||||| |||| ||||||||  |||||||| |  | |||||||||||||||||  |    
T  10532452 ctttgcaggagaggcctaataagtggataaaaatccgttcaattgatgaattgaagacaaaagtgaggcatgttgtcatcatgattcttcttgtaaactt 10532551  T
Q  304 gtttgagagga 314  Q
    |||| ||||||    
T  10532552 gttttagagga 10532562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 10667719 - 10667759
Alignment:
Q  227 tggatgaaaatcagctcacttgatgaactgaaaacaaaagt 267  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  10667719 tggatgaaaatcagctcacttgatgaaatgaagacaaaagt 10667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 10134207 - 10134241
Alignment:
Q  60 tctctttggaatgttcgctttgaaggtaatcataa 94  Q
    ||||||||||||||| |||||||||||||||||||    
T  10134207 tctctttggaatgtttgctttgaaggtaatcataa 10134241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 10264479 - 10264519
Alignment:
Q  218 aggcctaagtggatgaaaatcagctcacttgatgaactgaa 258  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  10264479 aggcctatgtggatgataatcagctcacttgatgaattgaa 10264519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 10521475 - 10521515
Alignment:
Q  227 tggatgaaaatcagctcacttgatgaactgaaaacaaaagt 267  Q
    ||||||||||||||||||||||||||| |||| | ||||||    
T  10521475 tggatgaaaatcagctcacttgatgaaatgaagaaaaaagt 10521515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 26796760 - 26796850
Alignment:
Q  247 tgatgaactgaaaacaaaagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtcattgccaca 337  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||   || |||||||||||||||||    
T  26796760 tgatgaattgaaaacaaaagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagaggaatgaaatggttgtcattgccaca 26796850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26816715 - 26816787
Alignment:
Q  1 atcagcaacacacctcatgatgtgcaacctgctgtcgaccgtgcccttaaaggatcctctctctttggaatgt 73  Q
    |||| |||||||||||||||||||  | || |||||||||||||||||||||||||||||||||| |||||||    
T  26816715 atcaacaacacacctcatgatgtgtcagcttctgtcgaccgtgcccttaaaggatcctctctcttcggaatgt 26816787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 11488796 - 11488888
Alignment:
Q  218 aggcctaagtggatgaaaatcagctcacttgatgaactgaaaacaaaagtagggcatgtta---ttgtaatgattcttcttgtaaaaatgttt 307  Q
    |||||||| ||||| |||||||||||| |||||||| |||| |||||||| | ||||||||   || | ||||||||||||||||||||||||    
T  11488796 aggcctaaatggatcaaaatcagctcatttgatgaattgaagacaaaagtggagcatgttatttttatcatgattcttcttgtaaaaatgttt 11488888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 26910597 - 26910630
Alignment:
Q  220 gcctaagtggatgaaaatcagctcacttgatgaa 253  Q
    |||||||| |||||||||||||||||||||||||    
T  26910597 gcctaagttgatgaaaatcagctcacttgatgaa 26910630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University