View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_low_10 (Length: 375)
Name: NF7855_low_10
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 25355536 - 25355181
Alignment:
| Q |
19 |
gcagttacgcatcattggatttctttgcaaggaaactcattggttttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaaccat |
118 |
Q |
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| T |
25355536 |
gcagtcacgcatcattggatttctttgcaaggaaactcattggttttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaaccat |
25355437 |
T |
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| Q |
119 |
gtctagattgtaaaccgtga-----------gctaactgttttgcagatttagtacaactaattctttaactaatggctcaaccaatgaagacataatca |
207 |
Q |
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| T |
25355436 |
gtctagattgtaaaccgtgatctaaatcttagctaactgttttgcagatttagtacaactaattctttaactaatggctcaaccaatgaagacataatca |
25355337 |
T |
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| Q |
208 |
ttattttttccttgcaatagtatgcaagcaatctttgataccatatcaacatataagccttgaaatgtagcaagcctaagtattgtcataatcattgttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355336 |
ttattttttccttgcaatagtatgcaagcaatctttgataccatatcatcatataagccttgaaatgtagcaagcctaagtattgtcataatcattgttt |
25355237 |
T |
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| Q |
308 |
ctgttaaacatggtgcattgaaaaagatgactgataacaatcctatggcgtgtgtg |
363 |
Q |
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| T |
25355236 |
ctgttaaacatggtgcattgaaagagatgactgataacaatcttattgtgtgtgtg |
25355181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 28 - 363
Target Start/End: Original strand, 15762976 - 15763328
Alignment:
| Q |
28 |
catcattggatttctttgcaaggaaactcattggttttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaaccatgtctagatt |
127 |
Q |
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| T |
15762976 |
catcattggatttctttgcaaggcaactcattgattttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaaccatctctagatt |
15763075 |
T |
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| Q |
128 |
gtaaaccgtga-----------gctaactgt--tttgcagatttagtacaactaattctttaactaatggctcaaccaatgaagacataatcattatttt |
214 |
Q |
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||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15763076 |
gtaaaccgtgatctaaatcttagctaactgtgttttgcagatttagtacagctaattctttaactaatggctcaaccaatgaagacataatcattatttt |
15763175 |
T |
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| Q |
215 |
ttccttgcaatagtat----gcaagcaatctttgataccatatcaacatataagccttgaaatgtagcaagcctaagtattgtcataatcattgtttctg |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15763176 |
ttccttgcaatagtatatatgcaagcaatctttgataccatatcatcatataagccttgaaatgtagcaagcctcagtattgtcataatcattgtttctg |
15763275 |
T |
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| Q |
311 |
ttaaacatggtgcattgaaaaagatgactgataacaatcctatggcgtgtgtg |
363 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
15763276 |
ttaaacatggtgcattgaaagagatgactgataacaatcctatggtgtgtgtg |
15763328 |
T |
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