View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7855_low_13 (Length: 287)
Name: NF7855_low_13
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_low_13 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 215691 - 215440
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
215691 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
215592 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
215591 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
215492 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
215491 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
215440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 689055 - 688804
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
689055 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
688956 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
688955 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
688856 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
688855 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
688804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 692251 - 692000
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
692251 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
692152 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
692151 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
692052 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
692051 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
692000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 696460 - 696209
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
696460 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
696361 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
696360 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
696261 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
696260 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
696209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 729314 - 729063
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
729314 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
729215 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
729214 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
729115 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
729114 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
729063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 853209 - 852958
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
853209 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
853110 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
853109 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
853010 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
853009 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
852958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 219900 - 219649
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
219900 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
219801 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
219800 |
taccttaaaataaggcgttggtagccgatgaatccttggttgtgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
219701 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219700 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
219649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 733523 - 733272
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
733523 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
733424 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
733423 |
taccttaaaataaggcgttggtagccgatgaatccttggttgtgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
733324 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
733323 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
733272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 857419 - 857168
Alignment:
| Q |
21 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtgcgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
857419 |
cagtcactatccacctaacctaaagaggctggcttatgtcacaaaaactgttgtacgctagttatgaaaaagttagaaaaatgaaatactaattgttagt |
857320 |
T |
|
| Q |
121 |
taccttaaaataaggcgttggtagccgatgaatccttggttatgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
857319 |
taccttaaaataaggcgttggtagccgatgaatccttggttgtgcaaattgtccgtagtgattttggcaagtgttccttcgtatctacccgttactaaga |
857220 |
T |
|
| Q |
221 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
857219 |
acactttgaatcctttctctatcaacgttttaaacaatcttagtaccacagg |
857168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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