View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_low_15 (Length: 280)
Name: NF7855_low_15
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 52 - 264
Target Start/End: Original strand, 32824676 - 32824892
Alignment:
| Q |
52 |
aaggacccaacaaaaacacaaacacactcgctatcatttttc----aataggggatgggaaccacaaacaaagaaactaaacctcttcttgacatgaagg |
147 |
Q |
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| T |
32824676 |
aaggacccaacaaaaacacaaacacactcgctataatttttcgatagataggggatgggaaccacaaacaaagaaactaaacctcttcttgacatgaagg |
32824775 |
T |
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| Q |
148 |
tgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatttctacgtaaa |
247 |
Q |
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| T |
32824776 |
tgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatttctacgtaaa |
32824875 |
T |
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| Q |
248 |
aacggttcatttcttcg |
264 |
Q |
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| T |
32824876 |
aacggttcatttcttcg |
32824892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 32808071 - 32808197
Alignment:
| Q |
138 |
gacatgaaggtgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||| ||||||||||||| ||||||| || ||||||| |
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| T |
32808071 |
gacatgaaggtgacaatccacaaaacttcaatgattttcccatcaaaacaaatcgaaaagaaatccttgttcttatcaaacatagacagagttctcaatt |
32808170 |
T |
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| Q |
238 |
tctacgtaaaaacggttcatttcttcg |
264 |
Q |
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| T |
32808171 |
ttcatgtgaaaacggttcatttcttcg |
32808197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32824631 - 32824665
Alignment:
| Q |
1 |
gctagctttgtcactgatctcaatatcacaccaac |
35 |
Q |
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| T |
32824631 |
gctagctttgtcactgatctcaatatcgcaccaac |
32824665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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