View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7855_low_19 (Length: 250)

Name: NF7855_low_19
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7855_low_19
NF7855_low_19
[»] chr8 (4 HSPs)
chr8 (156-235)||(1890107-1890186)
chr8 (66-127)||(33842234-33842296)
chr8 (95-152)||(36104391-36104449)
chr8 (66-127)||(6402682-6402744)
[»] chr4 (4 HSPs)
chr4 (61-151)||(14526034-14526124)
chr4 (61-150)||(48583900-48583989)
chr4 (86-142)||(2358812-2358869)
chr4 (61-110)||(6019874-6019923)
[»] chr5 (2 HSPs)
chr5 (61-151)||(41312898-41312988)
chr5 (99-142)||(21031959-21032002)
[»] scaffold0471 (1 HSPs)
scaffold0471 (95-152)||(2506-2564)
[»] chr2 (1 HSPs)
chr2 (95-152)||(42444272-42444330)
[»] chr1 (1 HSPs)
chr1 (66-127)||(11021566-11021628)
[»] scaffold0039 (1 HSPs)
scaffold0039 (66-127)||(102839-102901)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 1890186 - 1890107
Alignment:
Q  156 aataaacatctgagattttattagttactgtcatgatcaagtcgcaggcgaaaacaaaacttagaatctgactctcttct 235  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  1890186 aataaacatatgagattttattagttactgtcatgatgaagtcgcaggcgaaaacaaaacttagaatgtgactctcttct 1890107  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 33842296 - 33842234
Alignment:
Q  66 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 127  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  33842296 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 33842234  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 36104449 - 36104391
Alignment:
Q  95 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 152  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  36104449 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 36104391  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 6402682 - 6402744
Alignment:
Q  66 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 127  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||| ||||||||||    
T  6402682 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcatgtgttgagt 6402744  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 14526034 - 14526124
Alignment:
Q  61 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc 151  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||    
T  14526034 aaagaaatccattaataaagtgaattgcgtgctgttgaacatgtcgtgtggttttcgtgtgttgaatttgtcgtgctgtataacagcgctc 14526124  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 48583900 - 48583989
Alignment:
Q  61 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgct 150  Q
    |||| |||||||| ||||||||||||  ||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  48583900 aaagaaatccatttataaagtgaattaagtgttgttcaacatgttgtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct 48583989  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 2358869 - 2358812
Alignment:
Q  86 tgggtgctgttcaacatgtcgtgtggctttcgtgtgtt-gagtttgtcgtgttgtata 142  Q
    |||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  2358869 tgggtgatgttcaacatgtcctgcggctttcgtgtgttagagtttgtcgtgttgtata 2358812  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 6019923 - 6019874
Alignment:
Q  61 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtg 110  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  6019923 aaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtg 6019874  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 41312988 - 41312898
Alignment:
Q  61 aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc 151  Q
    |||| |||| |||||||||||||||||||||  ||||||||  |  ||| || ||||||||||||||||||||||||||||||||||||||    
T  41312988 aaagaaatctattaataaagtgaattgggtgtcgttcaacaacttatgtagcattcgtgtgttgagtttgtcgtgttgtatagcagcgctc 41312898  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 21031959 - 21032002
Alignment:
Q  99 acatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtata 142  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||    
T  21031959 acatgtcgtgtggctttcgtgtgttaagttgttcgtgttgtata 21032002  T

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Target: scaffold0471 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 2564 - 2506
Alignment:
Q  95 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 152  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  2564 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 2506  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 42444272 - 42444330
Alignment:
Q  95 ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca 152  Q
    |||||||||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||    
T  42444272 ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca 42444330  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 11021628 - 11021566
Alignment:
Q  66 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 127  Q
    |||||||||||||||| ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  11021628 aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 11021566  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 102839 - 102901
Alignment:
Q  66 aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt 127  Q
    |||||||||||||||| |||  |||||| || ||||||||||| ||| |||||||||||||||    
T  102839 aatccattaataaagtaaatatggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt 102901  T

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