View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7855_low_2 (Length: 863)

Name: NF7855_low_2
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7855_low_2
NF7855_low_2
[»] chr1 (6 HSPs)
chr1 (96-441)||(3144156-3144501)
chr1 (779-846)||(3144802-3144869)
chr1 (572-636)||(3144630-3144694)
chr1 (2-44)||(21444802-21444844)
chr1 (516-553)||(3144575-3144612)
chr1 (4-103)||(42267304-42267405)
[»] chr2 (4 HSPs)
chr2 (1-101)||(11689544-11689646)
chr2 (1-101)||(11721413-11721515)
chr2 (2-52)||(11689762-11689812)
chr2 (2-52)||(11721247-11721297)
[»] chr8 (2 HSPs)
chr8 (2-103)||(11291028-11291131)
chr8 (2-101)||(22890101-22890201)
[»] chr4 (4 HSPs)
chr4 (2-103)||(11857893-11857996)
chr4 (1-52)||(7280429-7280480)
chr4 (2-52)||(7280263-7280313)
chr4 (2-44)||(11858113-11858155)
[»] scaffold0181 (1 HSPs)
scaffold0181 (2-44)||(9427-9469)
[»] chr6 (2 HSPs)
chr6 (2-45)||(33648629-33648672)
chr6 (2-44)||(1215069-1215111)
[»] chr3 (2 HSPs)
chr3 (1-44)||(30380908-30380951)
chr3 (2-52)||(14633906-14633956)
[»] scaffold0100 (1 HSPs)
scaffold0100 (2-44)||(31082-31124)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 96 - 441
Target Start/End: Original strand, 3144156 - 3144501
Alignment:
Q  96 ataaaagcagtatacaatgtatatttgtagttgtatctatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 195  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144156 ataaaagcagtatagaatgtatatttgtagttgtatacatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 3144255  T
Q  196 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagacctctctcattcactcttttgagatttgcgccccaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144256 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagacctctctcattcactcttttgagatttgcgccccaa 3144355  T
Q  296 ccataatcttaactcatcttggacttggttttaagcaaataaggcggcgaccattactctctcttcttcactttctctattatttctgacttcattcacc 395  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144356 ccataatcttaactcatcttggacttagttttaagcaaataaggcggcgaccattactctctcttcttcactttctctattatttctgacttcattcacc 3144455  T
Q  396 aactaacattattaactgcattcatttccttcattaccttaacacg 441  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  3144456 aacttacattattaactgcattcatttccttcattaccttaacacg 3144501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 779 - 846
Target Start/End: Original strand, 3144802 - 3144869
Alignment:
Q  779 ctgaatataaaccgaaatagttttggtgtttgatgagtcactgctagtaaccgcttgattcttctatg 846  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144802 ctgaatataaaccgaaatagttttggtgtttgatgagtcactgctagtaaccgcttgattcttctatg 3144869  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 572 - 636
Target Start/End: Original strand, 3144630 - 3144694
Alignment:
Q  572 tgaagtttatgaagttgggttcaaagcctgatgcacttcaatctgatggcaagtttgtcaggtta 636  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144630 tgaagtttatgaagttgggttcaaagcctgatgcacttcaatctgatggcaagtttgtcaggtta 3144694  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 21444802 - 21444844
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 44  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  21444802 ttttaagtgattaaattttgacacggcaaaatgccaggattaa 21444844  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 553
Target Start/End: Original strand, 3144575 - 3144612
Alignment:
Q  516 aacatacgtgaccctactttctttgtttggttttcaag 553  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3144575 aacatacgtgatcctactttctttgtttggttttcaag 3144612  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 42267405 - 42267304
Alignment:
Q  4 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataaaa 101  Q
    |||| ||||||||||||| || |||||| || |||||||||||| ||||  || ||| |||||||||||| ||| ||  ||||| ||||||| |||||||    
T  42267405 ttaaatgattaaattttggcaggacaaattgtcaggattaaagaatacagggaccaatttttaaatgacccctatttgcagggaataaacacatataaaa 42267306  T
Q  102 gc 103  Q
    ||    
T  42267305 gc 42267304  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 11689646 - 11689544
Alignment:
Q  1 attttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtata 98  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||| ||||  |||||| |||||||||||| ||| ||  | ||||||||||| ||||    
T  11689646 attttaagtgattaaattttggcaggacaaaatgccgggattaaagaatacagggatcaatttttaaatgacccctatttccaaggactaaacacatata 11689547  T
Q  99 aaa 101  Q
    |||    
T  11689546 aaa 11689544  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11721413 - 11721515
Alignment:
Q  1 attttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtata 98  Q
    ||||||||||||||||||||| || || |||||| |||||||||||| ||||  |||||| |||||||||||| ||| ||  |  |||||||||| ||||    
T  11721413 attttaagtgattaaattttggcaggataaaatgtcaggattaaagaatacagggatcaatttttaaatgacccctatttccaaagactaaacacatata 11721512  T
Q  99 aaa 101  Q
    |||    
T  11721513 aaa 11721515  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 11689762 - 11689812
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 52  Q
    |||||||||||||||||||| || |||||| ||| ||||||||||| ||||    
T  11689762 ttttaagtgattaaattttggcaggacaaattgctaggattaaagaataca 11689812  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 11721297 - 11721247
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 52  Q
    |||||||||||||||||||| || | |||||||| ||||||||||| ||||    
T  11721297 ttttaagtgattaaattttggcagggcaaaatgctaggattaaagaataca 11721247  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 11291131 - 11291028
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataa 99  Q
    |||||||||||||||||||| |||| ||||||  ||||||||| || |||| || | |  |||||||||||  ||| || |||| |||||||||||||||    
T  11291131 ttttaagtgattaaattttggcatggcaaaatatcaggattaaggaatacaagaaccattttttaaatgactcctatttgtaggaactaaacacgtataa 11291032  T
Q  100 aagc 103  Q
    ||||    
T  11291031 aagc 11291028  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 22890201 - 22890101
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatca-attttaaatgacctctagttttagggactaaacacgtataaa 100  Q
    ||||||||||||||||||||||  ||||||||| || |||||| || |||| || ||  |||||||||||| ||| ||   |||||||||||| ||||||    
T  22890201 ttttaagtgattaaattttgacgggacaaaatgtcatgattaaggaatacaagaccattttttaaatgacccctatttaccgggactaaacacatataaa 22890102  T
Q  101 a 101  Q
    |    
T  22890101 a 22890101  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 11857996 - 11857893
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataa 99  Q
    |||||||||||||||||||| ||   ||||||||||||||||| || |||| |  | |  |||||||||||||||| ||  ||||||||||||| |||||    
T  11857996 ttttaagtgattaaattttggcagagcaaaatgccaggattaaggaatacagggaccattttttaaatgacctctatttgcagggactaaacacatataa 11857897  T
Q  100 aagc 103  Q
    ||||    
T  11857896 aagc 11857893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7280429 - 7280480
Alignment:
Q  1 attttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 52  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||||| ||||    
T  7280429 attttaagtgattaaattttgacatggcaaaatgtcagaattaaagaataca 7280480  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 7280313 - 7280263
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 52  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||| ||||    
T  7280313 ttttaagtgattaaattttgacagggcaaaatgacaggattaaagaataca 7280263  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 11858113 - 11858155
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 44  Q
    ||||||||||||||||||||||| |  ||||||||||||||||    
T  11858113 ttttaagtgattaaattttgacagggtaaaatgccaggattaa 11858155  T

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Target: scaffold0181 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 9427 - 9469
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 44  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  9427 ttttaagtgattaaattttgacaggacaaaataccaggattaa 9469  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 33648672 - 33648629
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaa 45  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  33648672 ttttaagtgattaaattttcacatgacaaaataccatgattaaa 33648629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 1215111 - 1215069
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 44  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  1215111 ttttaagtgattaaattttgacagggcaaaatgtcaggattaa 1215069  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30380951 - 30380908
Alignment:
Q  1 attttaagtgattaaattttgacatgacaaaatgccaggattaa 44  Q
    ||||||| |||||||||||||||||||||||||  |||||||||    
T  30380951 attttaaatgattaaattttgacatgacaaaatatcaggattaa 30380908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 14633956 - 14633906
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 52  Q
    ||||||||||||||||||||  | ||||||||| |||||||||||| ||||    
T  14633956 ttttaagtgattaaattttggtaggacaaaatgtcaggattaaagaataca 14633906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 31124 - 31082
Alignment:
Q  2 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 44  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  31124 ttttaagtgattaaattttgacaggacaaattgccagaattaa 31082  T

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