View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_low_20 (Length: 248)
Name: NF7855_low_20
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2795700 - 2795473
Alignment:
| Q |
1 |
tatgaacgtcaacaaattcatctgtctcgtccacaatttctacctgcatcgagaagcaattacattcagttttaaacgtgaaaaaatataaacaattggg |
100 |
Q |
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| T |
2795700 |
tatgaacgtcaacaaattcatctgtctcgtccacaatttctacctgcatcgagaagcaattacattcagttttatacgtgaaaaaatataaacaattggg |
2795601 |
T |
|
| Q |
101 |
ggatgcacatatctaagacaaaaatttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcaccattttcaacattttcgg |
200 |
Q |
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| T |
2795600 |
ggatgcacatatctaagacaaaaatttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcagcatgttcaacattttcg- |
2795502 |
T |
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| Q |
201 |
aagaaggagcgtttaactgcgaaccagtttg |
231 |
Q |
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| T |
2795501 |
--gaaggagcgtttaactgcgaaccagtttg |
2795473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 48670816 - 48670608
Alignment:
| Q |
1 |
tatgaacgtcaacaaattcatctgtctcgtccacaatttctacctgca-tcgagaagcaattacattcagttttaaacgtg---aaaaaatataaacaat |
96 |
Q |
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| T |
48670816 |
tatgaacgtcaacatattcatctgtctcatctacaatttcttcctgcactcaagaagcaattcaaatcaattt--aacgtgcggaaaaaaattaaaaaat |
48670719 |
T |
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| Q |
97 |
tgggggatgcacatatct---aagacaaaaa-tttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcaccattttcaac |
192 |
Q |
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| T |
48670718 |
tgtgggatgcacatatttcggaagacaaaaaatttacttgtagaagttcttcaaatacatcttccaaagtgataataccaatcacttcgccatcttcaaa |
48670619 |
T |
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| Q |
193 |
attttcggaag |
203 |
Q |
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| T |
48670618 |
attttcggaag |
48670608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 16391468 - 16391398
Alignment:
| Q |
115 |
aagacaaaaatttacttgtagaagttcttccaatacatcttccaaagtgataataccaatcacttcaccat |
185 |
Q |
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| T |
16391468 |
aagacagaaatttacttgcagaagttcttcaaatacatcttccaaagtgataataccaatcacttcaccat |
16391398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16391569 - 16391495
Alignment:
| Q |
1 |
tatgaacgtcaacaaattcatctgtctcgtccacaatttctacctgcat-cgagaagcaattacattcagtttta |
74 |
Q |
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|||||||||||||| ||||||| ||||| |||||||||||| ||||||| | ||| | |||| |||||||||||| |
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| T |
16391569 |
tatgaacgtcaacatattcatccgtctcatccacaatttcttcctgcatgcaagaggtaatttcattcagtttta |
16391495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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