View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_low_22 (Length: 231)
Name: NF7855_low_22
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_low_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 2795992 - 2795774
Alignment:
| Q |
13 |
atggacatcatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacg |
112 |
Q |
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| T |
2795992 |
atggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatattaaatcataaaattcgtgcaacg |
2795893 |
T |
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| Q |
113 |
gtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaat |
212 |
Q |
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| T |
2795892 |
gtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgttacaggtattctgcagaataaaat |
2795793 |
T |
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| Q |
213 |
ttataacatcaaaattccg |
231 |
Q |
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| T |
2795792 |
ttataacatcaaaattccg |
2795774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 48671084 - 48670950
Alignment:
| Q |
49 |
agattgatttcacttagaaactatagcagagaaacaaatatt-aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaac |
147 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | | |||| |||| ||||||| |||| ||||| || | ||| | |
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| T |
48671084 |
agattgatttcacttggaaactatagcagagaaacaaatattaaaatcataaaagatgcgtaacgttaaaccacttaccgctcccttttggccagtcatc |
48670985 |
T |
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| Q |
148 |
cttcggattgatggagctcgtgccattggggaagc |
182 |
Q |
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| T |
48670984 |
cttcggactgatggagctcgtgccattgaggaagc |
48670950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 16391722 - 16391689
Alignment:
| Q |
149 |
ttcggattgatggagctcgtgccattggggaagc |
182 |
Q |
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| T |
16391722 |
ttcggattgatggagctcgtgccattgaggaagc |
16391689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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