View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_low_4 (Length: 567)
Name: NF7855_low_4
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_low_4 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 655206 - 655754
Alignment:
| Q |
1 |
ccagcacttctctcgcatactttctttgacacataaatattccctttgaattatgtataatttccatgccaagaaaatagctcatctttaccacgacctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
655206 |
ccagcacttctctcgcatactttctttgacacataaatattccctttgaattctgtataatttccatgccaagaaaatagctcatctttcccaa-atctg |
655304 |
T |
|
| Q |
101 |
acatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655305 |
acatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattag |
655404 |
T |
|
| Q |
201 |
gattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctatgcgactggaccat |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
655405 |
gattttacctctctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctatgcgactgtaccat |
655504 |
T |
|
| Q |
301 |
gctcgcggagcctgtttcagtccgtctgaagctttatttagcttatataccttttcttcttctcccttcttctcaaagccagtaggttgttgtacataca |
400 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655505 |
gctcgcggagcctgtttcagtccgtataaagctttatttagcttatataccttttcttcttctcccttcttctcaaagccagtaggttgttgtacataca |
655604 |
T |
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| Q |
401 |
cctcttccttaagttctccttgaaggaatgcactcttgacatctaactggtatacttcccacttgttttgagctgcagttgccaggataagtcttattgt |
500 |
Q |
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| T |
655605 |
catcttccttaagttctccttgaaggaatgcactcttgacatctaactggtatacttcccacttgttttgagctgcagttgccaggataagtcttattgt |
655704 |
T |
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| Q |
501 |
atcaagacgagccaccggagcaaacacctatgtgtagtcaatcccatatt |
550 |
Q |
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| T |
655705 |
atcaagacaagccaccggagcaaacacctctgtgtagtcaatcccatatt |
655754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 14247031 - 14246936
Alignment:
| Q |
117 |
catcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
212 |
Q |
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| T |
14247031 |
catcattgagtttttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
14246936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 287
Target Start/End: Complemental strand, 11850614 - 11850427
Alignment:
| Q |
100 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
199 |
Q |
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|||||||||||||| ||||||||| | |||||||| ||||| ||| || |||||||||| ||||| || |||||||| || |||||||| || |||| |
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| T |
11850614 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcccggtatatattaaatcatctacataaagacttactatta |
11850515 |
T |
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| Q |
200 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
287 |
Q |
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| || || ||| |||||| ||||||||| | |||||||||| || ||| |||| ||||| |||||||| ||||| | |||||| |
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| T |
11850514 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
11850427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 287
Target Start/End: Complemental strand, 5877310 - 5877123
Alignment:
| Q |
100 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
199 |
Q |
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|||||||||||||| ||||||||| | |||||||| ||||| ||| || ||||||||| ||||| || |||||||| || |||| ||| || |||| |
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| T |
5877310 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcctggtatatattaaatcatctacataaacacttactatta |
5877211 |
T |
|
| Q |
200 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
287 |
Q |
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| T |
5877210 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
5877123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 964 - 1046
Alignment:
| Q |
130 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
212 |
Q |
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||||| || ||||| || ||| |||||||||| ||| |||| ||||||||||| ||||| || ||||||| || ||||||||| |
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| T |
964 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
1046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 6408 - 6490
Alignment:
| Q |
130 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
212 |
Q |
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||||| || ||||| || ||| |||||||||| ||| |||| ||||||||||| ||||| || ||||||| || ||||||||| |
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| T |
6408 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
6490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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