View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7855_low_6 (Length: 444)

Name: NF7855_low_6
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7855_low_6
NF7855_low_6
[»] chr6 (4 HSPs)
chr6 (14-444)||(21973191-21973615)
chr6 (272-325)||(900707-900760)
chr6 (252-326)||(18588585-18588659)
chr6 (262-330)||(17509512-17509580)
[»] chr2 (6 HSPs)
chr2 (62-444)||(21517480-21517853)
chr2 (243-377)||(28430266-28430400)
chr2 (30-92)||(28430453-28430515)
chr2 (163-207)||(28598288-28598332)
chr2 (254-312)||(12807985-12808043)
chr2 (247-316)||(5326002-5326071)
[»] chr7 (5 HSPs)
chr7 (252-325)||(28173809-28173882)
chr7 (272-325)||(23054817-23054870)
chr7 (253-325)||(5865341-5865413)
chr7 (254-318)||(22819552-22819616)
chr7 (144-216)||(29916451-29916523)
[»] chr5 (8 HSPs)
chr5 (252-325)||(23923083-23923156)
chr5 (272-325)||(29572702-29572755)
chr5 (272-325)||(29574079-29574132)
chr5 (272-325)||(29575456-29575509)
chr5 (272-325)||(29576833-29576886)
chr5 (272-325)||(29578210-29578263)
chr5 (272-325)||(29579587-29579640)
chr5 (128-188)||(4324066-4324126)
[»] chr1 (1 HSPs)
chr1 (272-325)||(4422889-4422942)
[»] chr4 (1 HSPs)
chr4 (254-325)||(28713153-28713224)
[»] chr3 (3 HSPs)
chr3 (254-325)||(17620284-17620355)
chr3 (128-190)||(30792935-30792997)
chr3 (128-190)||(30802791-30802853)
[»] scaffold0023 (1 HSPs)
scaffold0023 (252-294)||(92829-92871)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 21973191 - 21973615
Alignment:
Q  14 gacatcaacgtggtgtagggagattgctgaaatccgtgatagggtgggtggtgttggaggtaattggtttgaggtgagtgtctcgaaaaaggttggaaac 113  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21973191 gacatcaacgtggtggagggagattgctaaaatccgtgatagggtgggtggtgttggaggtaattggtttgaggtgagtgtctcgaaaaaggttggaaac 21973290  T
Q  114 gggttgcattcttatttttggtatgacccgtggttaggagggactcctttgtgtgtgcggtttaggcatttatttgacttggctaagaataagttgaata 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21973291 gggttgcattcttatttttggtatgacccgtggttaggagggactcctttgtgtgtgtggtttaggcatttatttgacttggctaagaataagttgaata 21973390  T
Q  214 cggtggctgatatgttttcctgggttagcgtgtggggtgtgaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgc 313  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||      ||||||||||||||||||||| |||||||    
T  21973391 cggtggctgatatgttttcctgggttagcgtgtgggg-gtgaggcgtggaagtggcgtaggaggt------tgtgggaggatgagttgttagtggagtgc 21973483  T
Q  314 aggatgttacttcatgacattatttcgcagactcatttatcagatcaaagggaatggcagcccgtatttgttcgaggttattcagtttgcggattttatc 413  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21973484 aggacgttacttcatgacattgtttcgcagactcatttatcagatcaaagggaatggcagcccgaatttgttcgaggttattcagttcgcggattttatc 21973583  T
Q  414 agctatt-aacttcttaggatttgatatcttt 444  Q
    ||||||| ||||||| ||||||||||||||||    
T  21973584 agctattaaacttctaaggatttgatatcttt 21973615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 900707 - 900760
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||    
T  900707 aggaggttgtgggcgtgggaggatgagttgttagcggagtgtaggttgttactt 900760  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 18588659 - 18588585
Alignment:
Q  252 gtgaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttacttc 326  Q
    ||||||| ||| ||||| |||||||||||||| |||||||||| ||  | |||| |||||| ||| |||||||||    
T  18588659 gtgaggcatggcagtggcgtaggaggttgtgggtgtgggaggaggatcttttagaggagtgtaggttgttacttc 18588585  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 17509580 - 17509512
Alignment:
Q  262 gaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttacttcatga 330  Q
    ||||||||||||||| |||||| |||||||||| |||||  ||| |||||| ||| | ||||| |||||    
T  17509580 gaagtggtgtaggagtttgtgggtgtgggaggaggagttactagaggagtgtaggttattactccatga 17509512  T

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Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 62 - 444
Target Start/End: Original strand, 21517480 - 21517853
Alignment:
Q  62 tggtgttggaggtaattggtttgaggtgagtgtctcgaaaaaggttggaaacgggttgcattcttatttttggtatgacccgtggttaggagggactcct 161  Q
    |||||||||||||  ||||||||||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||    
T  21517480 tggtgttggaggttgttggtttgagaagagtgtcttgaagaaggttggaaatgggttgcattcttatttttggtatgacccttggttaggagggacacct 21517579  T
Q  162 ttgtgtgtgcggtttaggcatttatttgacttggctaagaataagttgaatacggtggctgatatgttttcctgggttagcgtgtggggtgtgaggcgtg 261  Q
    |||||||||||||||| |  |||||| ||||||||  |||||||||||| || |||  ||  |||| |||||| ||     |||| |||||| |||   |    
T  21517580 ttgtgtgtgcggtttaagagtttattggacttggccgagaataagttgactatggtaactactatggtttccttgg-----gtgtagggtgt-agg---g 21517670  T
Q  262 gaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttacttcatgacattatttcgcagactcatttatcagatcaa 361  Q
    |    ||  || ||||||||||  ||||||||| ||||||||||  ||||| |||| |||| ||||||||||| ||| ||||||||||||||||||||||    
T  21517671 ggctaggcataagaggttgtgggcgtgggaggaggagttgttagtagagtgtaggaagttaattcatgacattgttttgcagactcatttatcagatcaa 21517770  T
Q  362 agggaatggcagcccgtatttgttcgaggttattcagtttgcggattttatcagctattaacttcttaggatttgatatcttt 444  Q
     ||||||| || | ||   |||| || ||||||||| |||||| | ||||||| | | |||||||| | |||| |||||||||    
T  21517771 tgggaatgacaactcgaccttgtccggggttattcattttgcgaagtttatcaacaaataacttctcaagattcgatatcttt 21517853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 377
Target Start/End: Complemental strand, 28430400 - 28430266
Alignment:
Q  243 gtgtggggtgtgaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttacttcatgacattatttcgca 342  Q
    |||| ||| |||||||||||||||||||||||||||||||  | |||||||| ||||||||||  ||||| | ||  |||||| ||| |||| ||| ||     
T  28430400 gtgtagggggtgaggcgtggaagtggtgtaggaggttgtgagtatgggaggaagagttgttagtagagtgaatgactttactttatgtcattgttttgct 28430301  T
Q  343 gactcatttatcagatcaaagggaatggcagcccg 377  Q
    ||||||||||||| ||||  |  ||||||||||||    
T  28430300 gactcatttatcatatcagtgaaaatggcagcccg 28430266  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 28430515 - 28430453
Alignment:
Q  30 agggagattgctgaaatccgtgatagggtgggtggtgttggaggtaattggtttgaggtgagt 92  Q
    |||||||||||| ||||||||||| ||||||| ||||| ||||||| ||||||||||| ||||    
T  28430515 agggagattgctaaaatccgtgatggggtgggcggtgtaggaggtagttggtttgaggagagt 28430453  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 28598332 - 28598288
Alignment:
Q  163 tgtgtgtgcggtttaggcatttatttgacttggctaagaataagt 207  Q
    |||||||||||||||||| | | ||||||||||||||||||||||    
T  28598332 tgtgtgtgcggtttaggcgtctctttgacttggctaagaataagt 28598288  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 12807985 - 12808043
Alignment:
Q  254 gaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtg 312  Q
    ||||| ||||||||||||||||||||||||  ||||||||| | |||| ||| ||||||    
T  12807985 gaggcttggaagtggtgtaggaggttgtgggcgtgggaggaggcgttggtagaggagtg 12808043  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 5326071 - 5326002
Alignment:
Q  247 ggggtgtgaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcagg 316  Q
    |||| ||||||||||| ||||| |  |||| ||||||  ||||||||||||| |||||| ||||||||||    
T  5326071 ggggggtgaggcgtggcagtggaggcggagattgtgggcgtgggaggatgagatgttagaggagtgcagg 5326002  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 28173809 - 28173882
Alignment:
Q  252 gtgaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    ||||||||||||||||| | ||||| ||||||  ||||||||| |||||| |||||||||| ||| ||||||||    
T  28173809 gtgaggcgtggaagtggaggaggagattgtgggcgtgggaggaggagttggtagcggagtgtaggttgttactt 28173882  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 23054817 - 23054870
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||||||||||| ||||||||||  || ||||||||||||| ||||| ||||||    
T  23054817 aggaggttgtgggtgtgggaggaaaagatgttagcggagtgtaggatattactt 23054870  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 5865413 - 5865341
Alignment:
Q  253 tgaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||||||||| ||||| |  ||| |||||||  ||| ||||| ||||||||||||||||| ||| ||||||||    
T  5865413 tgaggcgtggcagtggaggcggatgttgtgggcgtgagaggaggagttgttagcggagtgtaggttgttactt 5865341  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 22819552 - 22819616
Alignment:
Q  254 gaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggat 318  Q
    ||||||||| | ||| ||||||||||||||   |||||||| |||||||||| |||||| |||||    
T  22819552 gaggcgtggcaatggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtaggat 22819616  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 29916523 - 29916451
Alignment:
Q  144 tggttaggagggactcctttgtgtgtgcggtttaggcatttatttgacttggctaagaataagttgaatacgg 216  Q
    |||||||||||| ||| |||| |||||||||||||||   |||| ||||||||  ||||||||| || |||||    
T  29916523 tggttaggagggtctcttttgcgtgtgcggtttaggcccctattcgacttggccgagaataagtcgagtacgg 29916451  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 23923156 - 23923083
Alignment:
Q  252 gtgaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    ||||||| ||| ||||| | |||||||||||| |||||||||| ||| ||||||||||||| ||| ||||||||    
T  23923156 gtgaggcttggcagtggaggaggaggttgtgggtgtgggaggaggagatgttagcggagtgtaggttgttactt 23923083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29572702 - 29572755
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  29572702 aggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29572755  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29574079 - 29574132
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  29574079 aggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29574132  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29575456 - 29575509
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  29575456 aggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29575509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29576833 - 29576886
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  29576833 aggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29576886  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29578210 - 29578263
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  29578210 aggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29578263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 29579587 - 29579640
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  29579587 aggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 4324066 - 4324126
Alignment:
Q  128 tttttggtatgacccgtggttaggagggactcctttgtgtgtgcggtttaggcatttattt 188  Q
    |||||||||||||| ||||||||| | |||||||||  ||||||||||| |||| ||||||    
T  4324066 tttttggtatgaccggtggttaggtgagactcctttcagtgtgcggtttcggcacttattt 4324126  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 4422942 - 4422889
Alignment:
Q  272 aggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    |||||||||||| | || ||||| ||||||||||||||||| ||||||||||||    
T  4422942 aggaggttgtgggtatgagaggaagagttgttagcggagtgtaggatgttactt 4422889  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 28713153 - 28713224
Alignment:
Q  254 gaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    ||||||||||||||| | |||||| |||||  ||||||||| |||||| |||| ||||| ||| ||||||||    
T  28713153 gaggcgtggaagtggaggaggaggctgtgggcgtgggaggaggagttggtagcagagtgtaggttgttactt 28713224  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 17620355 - 17620284
Alignment:
Q  254 gaggcgtggaagtggtgtaggaggttgtggatgtgggaggatgagttgttagcggagtgcaggatgttactt 325  Q
    ||||||||||||||| | ||||||||||||  ||||||| | |||||| |||| ||||| ||| ||||||||    
T  17620355 gaggcgtggaagtggaggaggaggttgtgggcgtgggagaaggagttggtagcagagtgtaggttgttactt 17620284  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 30792935 - 30792997
Alignment:
Q  128 tttttggtatgacccgtggttaggagggactcctttgtgtgtgcggtttaggcatttatttga 190  Q
    |||||||||||| | |||| |||| | |||||||||  |||||||||||||||| ||||||||    
T  30792935 tttttggtatgatcggtggataggtgagactccttttagtgtgcggtttaggcacttatttga 30792997  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 30802791 - 30802853
Alignment:
Q  128 tttttggtatgacccgtggttaggagggactcctttgtgtgtgcggtttaggcatttatttga 190  Q
    |||||||||||| | |||| |||| | |||||||||  |||||||||||||||| ||||||||    
T  30802791 tttttggtatgatcggtggataggtgagactccttttagtgtgcggtttaggcacttatttga 30802853  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 92871 - 92829
Alignment:
Q  252 gtgaggcgtggaagtggtgtaggaggttgtggatgtgggagga 294  Q
    ||||||||||||||||||||||||||||||  | |||||||||    
T  92871 gtgaggcgtggaagtggtgtaggaggttgttcacgtgggagga 92829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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