View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7855_low_8 (Length: 398)
Name: NF7855_low_8
Description: NF7855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7855_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 10217413 - 10217780
Alignment:
| Q |
19 |
gatgctgctccagtagtagctgctttgggctcactgaaaactgttgattgagataggataatcctaaagcgcgttattttgacagggtatgtttgttgat |
118 |
Q |
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| T |
10217413 |
gatgctacaccagaagtagctgccttgggctcactgaaaactgttgatcgagataggataatcctgaagcgccttattctgacggggtatgtttgttgat |
10217512 |
T |
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| Q |
119 |
gtttgccatgactgatcaattgaaaaccgttagatatgaaaatagtttattatatatcaaaattatttttgaatatcttagattgtcaattgaagattgc |
218 |
Q |
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| T |
10217513 |
gtttgccatgactgatcaattgaaaaccgttagatatgaaaatagtttattatatatcaaaattatttttgaatatcttagattgtcaattgaagatcgc |
10217612 |
T |
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| Q |
219 |
ggaaaatattattttgctcaaatctcgctacactgcagtgctatactgccactatagccgtcatttgactacattttgtagtaaatagagcattgcggaa |
318 |
Q |
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| T |
10217613 |
ggaaaatattattttgctcaaatctcgctacactgcagtgctataccgccactatagccgtcatttgactacattttgtagtaaatagagtattgcggaa |
10217712 |
T |
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| Q |
319 |
atttactcaaattctgctaagttatacgctgctatagcgctatttaacaacacctgtgtctctatatt |
386 |
Q |
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| T |
10217713 |
atttactcaaattctgctaagttatacgctgctatagcgctatttaacaacacctatgtctctatatt |
10217780 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 53886566 - 53886483
Alignment:
| Q |
28 |
ccagtagtagctgctttgggctcactgaaaactgttgattgagataggataatcctaaagcgcgttattttgacagggtatgtt |
111 |
Q |
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| T |
53886566 |
ccagtagtggctgctgttggttcactgaaaactgttgatccagataggataatccttaagcgtgttattttgacagggtatgtt |
53886483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 4381963 - 4382020
Alignment:
| Q |
257 |
tgctatactgccactatagccgtcatttgactacattttgtagtaaatagagcattgc |
314 |
Q |
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| T |
4381963 |
tgctctacagccactatagcctttatttgacaacattttgtactaaatagcgcattgc |
4382020 |
T |
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