View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7856_low_1 (Length: 324)
Name: NF7856_low_1
Description: NF7856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7856_low_1 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 31717527 - 31717839
Alignment:
| Q |
16 |
gtgaaggaaatattagaa----gtgagtgtagtgtgctcttaatcattttactaaaaggaaattaagtagtttcatggcatgaatgaatattttcatgtt |
111 |
Q |
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| T |
31717527 |
gtgaaggaaatattagaattaagtgagtgtagtgtgctcttaatcattttactaaaaggaaattaagtagtttcatggcatgaatgaatattttcatgtt |
31717626 |
T |
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| Q |
112 |
gaacaacttaattttattgttgaaatactcagttcgataattcttgtccatcattttctaaattcgtttggctgatcatgtacatttatcttatagtttg |
211 |
Q |
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| T |
31717627 |
gaacaacttaattttattattgaaatactcagttcgataattcttgtccatcattttctaaattcgtttggctgatcatgtacatttatcttatagtttg |
31717726 |
T |
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| Q |
212 |
attatattatataaaactgcgtgacagatttgtattgttcgagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatccta |
311 |
Q |
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| T |
31717727 |
attatattatataaaactgcgtgacagatttgtattgttggagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatccta |
31717826 |
T |
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| Q |
312 |
tttgggacgaagt |
324 |
Q |
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| T |
31717827 |
tttgggacgaagt |
31717839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 31654168 - 31654258
Alignment:
| Q |
233 |
tgacagatttgtattgttcgagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatcctatttgggacgaag |
323 |
Q |
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| T |
31654168 |
tgacaggtttgtattgctggagtgggagctgatagtgtgaagatgaaaacaagtgtaaagatggacaattggtatcctgtttgggacgaag |
31654258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 31704522 - 31704626
Alignment:
| Q |
219 |
tatataaaactgcgtgacagatttgtattgttcgagtgggagctgattgtgttaagaagaaaacaagagtagagacggacaactggtatcctatttggga |
318 |
Q |
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| T |
31704522 |
tatacaaaactatgtgacaggtttctattgctggagtgagagctgattgtgccaagaagaaaacaagtgtaaagatggacaattggaatcccatttggga |
31704621 |
T |
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| Q |
319 |
cgaag |
323 |
Q |
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| T |
31704622 |
cgaag |
31704626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 53919014 - 53918985
Alignment:
| Q |
50 |
cttaatcattttactaaaaggaaattaagt |
79 |
Q |
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| T |
53919014 |
cttaatcattttactaaaaggaaattaagt |
53918985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 148 - 285
Target Start/End: Complemental strand, 44901563 - 44901426
Alignment:
| Q |
148 |
ataattcttgtccat-cattttctaaattcgtttggctgatcatgtacattt-atcttatagtttgattatattatataaaactgcgtgacagatttgta |
245 |
Q |
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|||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||| || ||||||| |||||| |
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| T |
44901563 |
ataattcttgtccacacattttctaaatctatttggctgatcctgtacattttatcttatagtttgatcaaattgtataaaattgtgtgacaggtttgta |
44901464 |
T |
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| Q |
246 |
ttgttcgagtgggagctgattgtgttaagaagaaaacaag |
285 |
Q |
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| T |
44901463 |
ttgttggagtgggagctgactgtg--aagaagaaaacaag |
44901426 |
T |
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