View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7857_high_2 (Length: 375)
Name: NF7857_high_2
Description: NF7857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7857_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 474161 - 474506
Alignment:
| Q |
11 |
gatgaaagtggtggtttgagtgctaataaaggtgttgctcaagaggatgagggcaatactaccccttttcctgagagggtatgtgtcctatgagtttgtt |
110 |
Q |
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| T |
474161 |
gatgaaagtggtggtttgagtgctaataaaggtgttgctcaagaggatgagggcaatactaccccttttcctgagagggtatgtgtcctatgagtttgtt |
474260 |
T |
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| Q |
111 |
caattttttcatggcatgcaaatgctttagatcatgnnnnnnnnnnnnnnnnnnnnnatgagctagccgtgaaattaacacactaaatgcagagaagtag |
210 |
Q |
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| T |
474261 |
caattttt-catggcatgcaaatgctttagatcatgtttttttttgtttggttttt-atgagctagccgtgaaattaacacactaaatgcagagaagtag |
474358 |
T |
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| Q |
211 |
ggataaatggcgggttaaacccgcaatctagcatatcaattgttcctacaacatgtagtcaagagagtttggatcatgttttaattagaatgaatttatt |
310 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474359 |
ggataaatggtgggttaaacccgcaatccagcatatcaattgctcctacaacatgtagtcaagagagtttggatcatgttttaattagaatgaatttatt |
474458 |
T |
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| Q |
311 |
atttatggtatcttgattttgatcggataaatgttggtatagatttat |
358 |
Q |
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| T |
474459 |
atttatggtatcttgattttgatcggataaatgttggtatagatttat |
474506 |
T |
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