View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7857_low_1 (Length: 376)
Name: NF7857_low_1
Description: NF7857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7857_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 474506 - 474161
Alignment:
| Q |
18 |
ataaatctataccaacatttatccgatcaaaatcaagataccataaataataaattcattctaattaaaacatgatccaaactctcttgactacatgttg |
117 |
Q |
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| T |
474506 |
ataaatctataccaacatttatccgatcaaaatcaagataccataaataataaattcattctaattaaaacatgatccaaactctcttgactacatgttg |
474407 |
T |
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| Q |
118 |
taggaacaattgatatgctagattgcgggtttaacccgccatttatccctacttctctgcatttagtgtgttaatttcacggctagctcataaaaaccaa |
217 |
Q |
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||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474406 |
taggagcaattgatatgctggattgcgggtttaacccaccatttatccctacttctctgcatttagtgtgttaatttcacggctagctcataaaaaccaa |
474307 |
T |
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| Q |
218 |
acnnnnnnnnnncatgatctaaagcatttgcatgccatgaaaaaattgaacaaactcataggacacataccctctcaggaaaaggggtagtattgccctc |
317 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474306 |
ac-aaaaaaaaacatgatctaaagcatttgcatgccatg-aaaaattgaacaaactcataggacacataccctctcaggaaaaggggtagtattgccctc |
474209 |
T |
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| Q |
318 |
atcctcttgagcaacacctttattagcactcaaaccaccactttcatc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474208 |
atcctcttgagcaacacctttattagcactcaaaccaccactttcatc |
474161 |
T |
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