View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7857_low_2 (Length: 307)
Name: NF7857_low_2
Description: NF7857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7857_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 30274508 - 30274778
Alignment:
| Q |
18 |
acatcagatacgacaatgacactgacacgtaaatatcagtgataacataaaaatgactgcatattatcacatgtgttagcgttgtatctatactgttgtt |
117 |
Q |
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| T |
30274508 |
acattagatacgacaatgacactgacacgtaaatatcaatgataacataaaaatgactgcatattatcacatgtgttagcgttgtatctatactgttgtt |
30274607 |
T |
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| Q |
118 |
gtctgacactcacgccttcaatataaaacgtcgatgctacatgtgttgtaattgatttagcatatgtcatataaatggcctaccgtgacaatgacagatt |
217 |
Q |
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| T |
30274608 |
gtctgacactcacgccttcaatataaagcgtcgatgctacatgtgttgtaattgatttagcatatgtcatataaatggcctaccgtgacaatgacagatt |
30274707 |
T |
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| Q |
218 |
tgtcttcattaaagagaggttgatccccagaagcaggatcaactatggctaaccgttggtgtgccaaaaag |
288 |
Q |
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| T |
30274708 |
tgtcttcattaaagagaggttgatccccagaagcaggatcaactatggctaaccgttggtgtgccaaaaag |
30274778 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 25967341 - 25967428
Alignment:
| Q |
198 |
taccgtgacaatgacagatttgtcttcattaaagagaggttgatccccagaagcaggatcaactatggctaaccgttggtgtgccaaa |
285 |
Q |
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|||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||| |
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| T |
25967341 |
taccgtgacaataattgatttatcttcattgaagagaggttgatcaccagaagcaggatcaacaatggctaacctttgatgagccaaa |
25967428 |
T |
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