View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7858_low_1 (Length: 260)
Name: NF7858_low_1
Description: NF7858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7858_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 4243853 - 4243620
Alignment:
| Q |
9 |
gagcagaacctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaac |
108 |
Q |
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| T |
4243853 |
gagcataatctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaac |
4243754 |
T |
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| Q |
109 |
aatccatggcttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcacacataacacatgattcctcgcactgaattcctcttgcatt |
208 |
Q |
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| T |
4243753 |
aatccatggcttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcaaacataacacatgattcctcgcactggattcctcttgcatt |
4243654 |
T |
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| Q |
209 |
aagattgacacgagtgggcaagcaatgatgagct |
242 |
Q |
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| T |
4243653 |
aagattgacacgagtgggcaagcaattatgagct |
4243620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 33495732 - 33495956
Alignment:
| Q |
18 |
ctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaacaatccatgg |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
33495732 |
ctgtgcgtaaagtcaaacaacaatgtagtaaagttgttagcaagagggagaagctcacttaacacatcatataagccaatattcttccaacaatccatgg |
33495831 |
T |
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| Q |
118 |
cttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcacacataacacatgattcctcgcactgaattcctcttgcattaagattgac |
217 |
Q |
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| T |
33495832 |
cttttgcacaaacaaagaagagattaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttacattaagattgac |
33495931 |
T |
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| Q |
218 |
acgagtgggcaagcaatgatgagct |
242 |
Q |
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| T |
33495932 |
acgggtgggcaagaaatgatgagct |
33495956 |
T |
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