View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7858_low_2 (Length: 631)

Name: NF7858_low_2
Description: NF7858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7858_low_2
NF7858_low_2
[»] chr2 (12 HSPs)
chr2 (99-629)||(14007430-14007962)
chr2 (408-518)||(45035155-45035265)
chr2 (409-518)||(45033361-45033470)
chr2 (294-395)||(20957437-20957538)
chr2 (297-395)||(20957612-20957710)
chr2 (410-518)||(17308689-17308797)
chr2 (443-518)||(1015756-1015831)
chr2 (406-512)||(3372458-3372564)
chr2 (297-405)||(17149055-17149163)
chr2 (400-503)||(33187188-33187291)
chr2 (448-518)||(30191620-30191690)
chr2 (299-339)||(8760002-8760042)
[»] chr3 (12 HSPs)
chr3 (294-512)||(26667004-26667223)
chr3 (294-422)||(25836367-25836495)
chr3 (414-518)||(27682197-27682301)
chr3 (297-404)||(9032830-9032937)
chr3 (443-518)||(41874545-41874620)
chr3 (414-518)||(28133726-28133830)
chr3 (408-518)||(4602293-4602403)
chr3 (294-375)||(548092-548172)
chr3 (408-518)||(4609105-4609215)
chr3 (328-396)||(43819944-43820012)
chr3 (414-511)||(26317951-26318048)
chr3 (408-449)||(27972591-27972632)
[»] chr5 (12 HSPs)
chr5 (294-519)||(6742425-6742653)
chr5 (408-518)||(10410798-10410908)
chr5 (294-405)||(4897423-4897532)
chr5 (408-507)||(10412371-10412470)
chr5 (284-391)||(21637272-21637381)
chr5 (301-422)||(33689869-33689990)
chr5 (414-518)||(8081508-8081612)
chr5 (443-518)||(25725808-25725883)
chr5 (294-403)||(33688153-33688262)
chr5 (443-518)||(25502025-25502100)
chr5 (411-518)||(25506938-25507045)
chr5 (445-512)||(40382763-40382830)
[»] chr8 (7 HSPs)
chr8 (296-518)||(35674837-35675058)
chr8 (400-518)||(30634229-30634347)
chr8 (413-505)||(35673345-35673437)
chr8 (297-394)||(29456284-29456381)
chr8 (443-518)||(1175148-1175223)
chr8 (413-510)||(1173513-1173610)
chr8 (294-329)||(35673477-35673512)
[»] chr7 (10 HSPs)
chr7 (294-405)||(29598097-29598208)
chr7 (284-405)||(21633313-21633436)
chr7 (443-511)||(29924665-29924733)
chr7 (284-405)||(21631352-21631467)
chr7 (294-405)||(21631122-21631225)
chr7 (426-511)||(21464528-21464615)
chr7 (284-369)||(9878298-9878384)
chr7 (342-423)||(3232944-3233025)
chr7 (301-395)||(21633093-21633179)
chr7 (342-391)||(29856101-29856150)
[»] chr4 (11 HSPs)
chr4 (408-512)||(28395559-28395667)
chr4 (297-422)||(42664932-42665057)
chr4 (298-405)||(10032679-10032785)
chr4 (294-366)||(42665175-42665247)
chr4 (294-366)||(18812702-18812774)
chr4 (451-519)||(4847687-4847755)
chr4 (284-367)||(18807515-18807599)
chr4 (344-395)||(5653307-5653358)
chr4 (295-334)||(19223142-19223181)
chr4 (294-375)||(8818773-8818853)
chr4 (330-408)||(8678562-8678640)
[»] chr6 (6 HSPs)
chr6 (294-403)||(30488432-30488541)
chr6 (400-519)||(15689026-15689145)
chr6 (294-367)||(25050859-25050932)
chr6 (381-490)||(9373599-9373707)
chr6 (400-511)||(34350341-34350452)
chr6 (294-374)||(26857816-26857895)
[»] scaffold0060 (1 HSPs)
scaffold0060 (284-394)||(9093-9205)
[»] chr1 (6 HSPs)
chr1 (298-405)||(1284831-1284937)
chr1 (400-519)||(44782182-44782301)
chr1 (414-518)||(46679708-46679812)
chr1 (319-405)||(33072760-33072845)
chr1 (295-405)||(10653488-10653594)
chr1 (294-389)||(41892084-41892178)
[»] scaffold0245 (2 HSPs)
scaffold0245 (298-405)||(9476-9582)
scaffold0245 (298-405)||(11098-11204)
[»] scaffold0229 (1 HSPs)
scaffold0229 (298-405)||(9804-9910)
[»] scaffold0160 (1 HSPs)
scaffold0160 (297-375)||(28412-28490)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 99 - 629
Target Start/End: Original strand, 14007430 - 14007962
Alignment:
Q  99 catgtaacaatgttagtctttcatcaggattcgatggaagatgaacaaaatcagtacaagcaaaagagggtatatgacttaatgacgtcaccaacgtgca 198  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  14007430 catgtaacaatgttagtctttcagcaggattcgatggaagatgaacaaaatcagtacaagcaaaagaggg-atatgacttaatgacatcaccaacgtgca 14007528  T
Q  199 tgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtataattagataagcatggaacaaattaagcatactattagagtagtg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007529 tgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtataattagataagcatggaacaaattaagcatactattagagtagtg 14007628  T
Q  299 aataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagacta----actctcccctataaataactctc 394  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    |||| ||| ||||||||||||||    
T  14007629 aataaaccatagttagttaatatgtaaactatggttagttggttggttaggtagttaagagttagttagactaacttactcacccatataaataactctc 14007728  T
Q  395 atcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaac 494  Q
    | |||||||||||||| ||||||||||||||||||||||| ||||   ||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  14007729 accattgtactatttttatatcttttattcatttctatctatgtc---actcctagagagaattagacaatccatctttccattgcatttgacctagaac 14007825  T
Q  495 catggaatcctttgattcctaacacatgcaatcttctatcaattagttaaactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaat 594  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007826 catggaatcctttgattcataacacatgcaatcttctatcaattggttaaactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaat 14007925  T
Q  595 aacgtgttctagtttctc--tagatgtttagaataat 629  Q
    ||| ||||||||||||||  |||||||||||||||||    
T  14007926 aacatgttctagtttctctttagatgtttagaataat 14007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 408 - 518
Target Start/End: Original strand, 45035155 - 45035265
Alignment:
Q  408 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 507  Q
    ||||| |||||||||||||||  |||||||| || |||||||||||||| || |||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  45035155 tttcaaatcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatccttt 45035254  T
Q  508 gattcctaaca 518  Q
    ||||| |||||    
T  45035255 gattcataaca 45035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 409 - 518
Target Start/End: Original strand, 45033361 - 45033470
Alignment:
Q  409 ttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttg 508  Q
    ||||||||||||||||||||  |||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  45033361 ttcatatcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttttg 45033460  T
Q  509 attcctaaca 518  Q
    |||| |||||    
T  45033461 attcataaca 45033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 20957437 - 20957538
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||| ||||||||||||| |||    
T  20957437 tagtgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtct 20957536  T
Q  394 ca 395  Q
    ||    
T  20957537 ca 20957538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 297 - 395
Target Start/End: Original strand, 20957612 - 20957710
Alignment:
Q  297 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctca 395  Q
    |||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||| ||||||||||||| |||||    
T  20957612 tgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtctca 20957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 410 - 518
Target Start/End: Original strand, 17308689 - 17308797
Alignment:
Q  410 tcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttga 509  Q
    ||||||||||||| || || | |||| || || |||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  17308689 tcatatcttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttga 17308788  T
Q  510 ttcctaaca 518  Q
    ||| |||||    
T  17308789 ttcataaca 17308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 1015756 - 1015831
Alignment:
Q  443 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 518  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  1015756 actccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 1015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 406 - 512
Target Start/End: Complemental strand, 3372564 - 3372458
Alignment:
Q  406 attttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 505  Q
    |||||||||| |||||||||||| |||||||||  | ||||| ||||||||||| | |||| |||||||||||| |||||||||| ||| |||||||| |    
T  3372564 attttcatatattttattcatttttatctttgtggtgactcccagagagaattatagaatctatctttccattgtatttgacctagaactatggaatctt 3372465  T
Q  506 ttgattc 512  Q
    |||||||    
T  3372464 ttgattc 3372458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 17149163 - 17149055
Alignment:
Q  297 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcat 396  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||| || ||| ||| ||| |||| ||||||||||| ||  |||| ||| |||| |||||    
T  17149163 tgaataaaccatagttagttgataggtaaattatggttagttggttgtttaagtaattaggagtcagttagactaattcatccctgtaagtaaccctcat 17149064  T
Q  397 cattgtact 405  Q
    |||||||||    
T  17149063 cattgtact 17149055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 503
Target Start/End: Complemental strand, 33187291 - 33187188
Alignment:
Q  400 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 499  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||| |||||||||||| ||||||||||| ||||||||||| ||| ||||    
T  33187291 tgtactatttcattatcttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccattacatttgacctagaacaatgg 33187192  T
Q  500 aatc 503  Q
    ||||    
T  33187191 aatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 518
Target Start/End: Original strand, 30191620 - 30191690
Alignment:
Q  448 tagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 518  Q
    |||||||||||| | |||| |||||| ||||| |||||| ||| ||||||||||||||||||||| |||||    
T  30191620 tagagagaattatataatctatcttttcattgtatttgatctagaaccatggaatcctttgattcataaca 30191690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 8760002 - 8760042
Alignment:
Q  299 aataaaccatagttagttaatatgtaaactatggttagttg 339  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  8760002 aataaatcataattagttgatatgtaaactatggttagttg 8760042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 294 - 512
Target Start/End: Complemental strand, 26667223 - 26667004
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26667223 tagtgaattaaccatagttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataactct 26667124  T
Q  394 catcattgtactattttcatatcttttattca-tttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaa 492  Q
    || |||||||| |||||||||||||||||||| ||||||||||||| || |||| ||| ||||||||||||||| | |||||||| |||||||| ||| |    
T  26667123 caccattgtaccattttcatatcttttattcattttctatctttgtgatgactcttagggagaattacacaatctacctttccatcgcatttgatctaga 26667024  T
Q  493 accatggaatcctttgattc 512  Q
    |||||| |||||||||||||    
T  26667023 accatgaaatcctttgattc 26667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 294 - 422
Target Start/End: Original strand, 25836367 - 25836495
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    ||||||||||||||||||||||| |||  |||||||||| ||||||| | |||||||||||| |||||||||||||||  ||  || |||||||||||||    
T  25836367 tagtgaataaaccatagttagttgatagataaactatggctagttggttagttaggtagttaggagttagttagactagttcatccttataaataactct 25836466  T
Q  394 catcattgtactattttcatatcttttat 422  Q
    || ||||||||| | ||  ||||||||||    
T  25836467 caccattgtactctcttgttatcttttat 25836495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 27682197 - 27682301
Alignment:
Q  414 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 513  Q
    |||||||||||||||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  27682197 atcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 27682296  T
Q  514 taaca 518  Q
    |||||    
T  27682297 taaca 27682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 9032937 - 9032830
Alignment:
Q  297 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcat 396  Q
    |||||||| ||||||||||| ||||| ||||||||||||| ||| |||||  |||||||||||||||||||||||||| |||| |||||||| || |||     
T  9032937 tgaataaatcatagttagttgatatgaaaactatggttagctggttggttgagtagttaagagttagttagactaactttcccttataaatagctttcac 9032838  T
Q  397 cattgtac 404  Q
    ||||||||    
T  9032837 cattgtac 9032830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 41874545 - 41874620
Alignment:
Q  443 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 518  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  41874545 actcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 41874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 28133726 - 28133830
Alignment:
Q  414 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 513  Q
    |||||||||||| ||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  28133726 atcttttattcaattgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 28133825  T
Q  514 taaca 518  Q
    |||||    
T  28133826 taaca 28133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 408 - 518
Target Start/End: Original strand, 4602293 - 4602403
Alignment:
Q  408 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 507  Q
    |||||||||||||||| | ||  |||||||| || |||| ||||||||| || |||||  | ||||||||||||||||| ||| ||||||||||||||||    
T  4602293 tttcatatcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatccttt 4602392  T
Q  508 gattcctaaca 518  Q
    ||||| |||||    
T  4602393 gattcataaca 4602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 548092 - 548172
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactc 375  Q
    ||||||||||| |||| |||| ||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  548092 tagtgaataaatcatatttagataatg-gtaaactatgattagttggttggttaggtagttaagagttagttagactaactc 548172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 518
Target Start/End: Original strand, 4609105 - 4609215
Alignment:
Q  408 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 507  Q
    |||||||||||||||||| ||  |||||||| || ||| |||||||||| || |||||  | ||||| ||||||||||| ||| ||| || |||||||||    
T  4609105 tttcatatcttttattcaattgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttgatctagaacaattgaatccttt 4609204  T
Q  508 gattcctaaca 518  Q
    ||||| |||||    
T  4609205 gattcataaca 4609215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 43820012 - 43819944
Alignment:
Q  328 tatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcat 396  Q
    |||| |||||||| ||||||||||||||| ||||||| |||||||||| | |||||||||||| |||||    
T  43820012 tatgattagttggttggttaggtagttaaaagttagtaagactaactcactcctataaataaccctcat 43819944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 511
Target Start/End: Complemental strand, 26318048 - 26317951
Alignment:
Q  414 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 511  Q
    |||||||||||||||||||  || | || ||||||  |||| | || |||||| |||||| ||||| ||||||  || ||||||| ||||||||||||    
T  26318048 atcttttattcatttctattgttctaatgactcctcaagagcaataaacaatctatcttttcattgtatttgatttagaaccatgaaatcctttgatt 26317951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 27972591 - 27972632
Alignment:
Q  408 tttcatatcttttattcatttctatctttgtcataactccta 449  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  27972591 tttcatatcttttattcatttctatatttgtgatgactccta 27972632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 294 - 519
Target Start/End: Original strand, 6742425 - 6742653
Alignment:
Q  294 tagtgaataaacca---tagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataac 390  Q
    ||||||||||||||   |||||| ||||||| |||| ||||||||||||| |||||||||| |||||||||||||| ||||| |  |  |||||||||||    
T  6742425 tagtgaataaaccaatatagttaattaatatataaattatggttagttggttggttaggtaattaagagttagttaaactaatttacttctataaataac 6742524  T
Q  391 tctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgaccta 490  Q
    |||||  ||||||||||||| |||| ||||||| |||||||||||||| || |||| ||||||||| ||||||||| ||||||||||||||||||| |||    
T  6742525 tctcactattgtactattttgatattttttatttatttctatctttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatcta 6742624  T
Q  491 aaaccatggaatcctttgattcctaacac 519  Q
     ||| |||||||| |||||||| ||||||    
T  6742625 gaactatggaatcgtttgattcataacac 6742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 408 - 518
Target Start/End: Original strand, 10410798 - 10410908
Alignment:
Q  408 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 507  Q
    ||||| |||||||||||||||  |||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10410798 tttcacatcttttattcatttgcatctttgggatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatccttt 10410897  T
Q  508 gattcctaaca 518  Q
    ||||| |||||    
T  10410898 gattcataaca 10410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 4897532 - 4897423
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  4897532 tagtgaataaaccatagttagataatg-gtaaactatggttagttggttgattaggtagttaagagttagttagactaactc-accctataaataactct 4897435  T
Q  394 catcattgtact 405  Q
    ||  ||||||||    
T  4897434 caatattgtact 4897423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 408 - 507
Target Start/End: Original strand, 10412371 - 10412470
Alignment:
Q  408 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 507  Q
    |||||||||||||||||||||  |||||||| |||| || |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||    
T  10412371 tttcatatcttttattcatttgcatctttgtgataattcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatccttt 10412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 284 - 391
Target Start/End: Complemental strand, 21637381 - 21637272
Alignment:
Q  284 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccct 381  Q
    ||||||||||||  ||||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||| |||||||||| |||||||| ||| |    
T  21637381 actattagagtatagtgaataaaccatagttagtttatatgagaactatagttagttggttggttaggtagttaggagttagttacactaactcaccctt 21637282  T
Q  382 ataaataact 391  Q
    ||||||||||    
T  21637281 ataaataact 21637272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 33689869 - 33689990
Alignment:
Q  301 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatcatt 400  Q
    |||||||||||||||||||| ||||||||||| || |||| | ||||||||||||||||| | |||||||||||  ||| |||||||| ||||||  |||    
T  33689869 taaaccatagttagttaataagtaaactatggataattggttagttaggtagttaagagtcaattagactaacttgcccttataaatagctctcactatt 33689968  T
Q  401 gtactattttcatatcttttat 422  Q
    ||||||||||  ||||||||||    
T  33689969 gtactattttgttatcttttat 33689990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 8081508 - 8081612
Alignment:
Q  414 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 513  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||     
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattca 8081607  T
Q  514 taaca 518  Q
    |||||    
T  8081608 taaca 8081612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 25725883 - 25725808
Alignment:
Q  443 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 518  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  25725883 actcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 25725808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 294 - 403
Target Start/End: Original strand, 33688153 - 33688262
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||||||||| | |||||||| | || |||| |||| ||||    
T  33688153 tagtgattaaaccatagttagttaatatgtaaattatggttggttagttggttaggtatttaagagttactaagactaacccacctctattaatagctct 33688252  T
Q  394 catcattgta 403  Q
    || |||||||    
T  33688253 caccattgta 33688262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 25502100 - 25502025
Alignment:
Q  443 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 518  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |||||| |||||    
T  25502100 actcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcataaca 25502025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 411 - 518
Target Start/End: Complemental strand, 25507045 - 25506938
Alignment:
Q  411 catatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 510  Q
    ||||| |||||| || || | ||||||| || | ||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||    
T  25507045 catattttttatacaattgtttctttgtaatgaatcccagagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttat 25506946  T
Q  511 tcctaaca 518  Q
    || |||||    
T  25506945 tcataaca 25506938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 512
Target Start/End: Complemental strand, 40382830 - 40382763
Alignment:
Q  445 tcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattc 512  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  40382830 tcctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattc 40382763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 296 - 518
Target Start/End: Complemental strand, 35675058 - 35674837
Alignment:
Q  296 gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctca 395  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||| | |||||||||||||||||    
T  35675058 gtgaataaatcatagttagttaatatgtaaactatggttagttggttagttagatagttaggagttagttagactaactcactcctataaataactctca 35674959  T
Q  396 tc-attgtactattttca-tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaa 493  Q
     | ||||   |||| ||| | |||   |||||||| ||||||||| || |||||||||||||||||||||||| | |||||||||||||||||| || ||    
T  35674958 actattg---tattctcattgtctaaaattcatttatatctttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaa 35674862  T
Q  494 ccatggaatcctttgattcctaaca 518  Q
    ||||| ||||||  ||||| |||||    
T  35674861 ccatgcaatcctcagattcgtaaca 35674837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 30634347 - 30634229
Alignment:
Q  400 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 499  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  30634347 tgtactatttcattatcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatag 30634248  T
Q  500 aatcctttgattcctaaca 518  Q
    ||||||||||||| |||||    
T  30634247 aatcctttgattcataaca 30634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 35673437 - 35673345
Alignment:
Q  413 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 505  Q
    |||||||||||||||| ||||| ||| || | || |||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||    
T  35673437 tatcttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 297 - 394
Target Start/End: Complemental strand, 29456381 - 29456284
Alignment:
Q  297 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctc 394  Q
    ||||| || |||||||||| |||| ||||||||| |||||||   |||||||||||||| |||||| |||||||||||| ||| | ||||||||||||    
T  29456381 tgaatcaatcatagttagtcaataagtaaactatagttagttaattggttaggtagttatgagttatttagactaactcacccttgtaaataactctc 29456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 1175148 - 1175223
Alignment:
Q  443 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 518  Q
    ||||||||| | |||||||||||| |||||| |||| ||||||||||| |||||| ||||||||| |||| |||||    
T  1175148 actcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcataaca 1175223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 510
Target Start/End: Original strand, 1173513 - 1173610
Alignment:
Q  413 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 510  Q
    |||||||||| || || | |||| || || ||||||||||||||||| |||||| || ||| |||||||||||| ||| ||  |||||||||||||||    
T  1173513 tatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatcctttgat 1173610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 35673512 - 35673477
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaacta 329  Q
    ||||||||||||||||||||||||||||||||||||    
T  35673512 tagtgaataaaccatagttagttaatatgtaaacta 35673477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 29598208 - 29598097
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  29598208 tagtgaataaaccatagttagttaatatgtaaactatggttagtttgtaggttaggtggttaggagttagttagactaactcacccctataaataactct 29598109  T
Q  394 catcattgtact 405  Q
    || |||| ||||    
T  29598108 caccattatact 29598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 21633436 - 21633313
Alignment:
Q  284 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccct 381  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| |||||||||| ||||| || || ||    
T  21633436 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttaggtggttaggagttagttatactaattcaccact 21633337  T
Q  382 ataaataactctcatcattgtact 405  Q
    |||||||||| ||| |||||||||    
T  21633336 ataaataactatcaccattgtact 21633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 443 - 511
Target Start/End: Original strand, 29924665 - 29924733
Alignment:
Q  443 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 511  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  29924665 actcctagagagaattacacaatctatctttccattgcatttgacctagaactatggaatcctttgatt 29924733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 21631467 - 21631352
Alignment:
Q  284 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccct 381  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||        |||||||||||||||||| |||||    
T  21631467 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttagg--------agttagttagactaactcacccct 21631376  T
Q  382 ataaataactctcatcattgtact 405  Q
    ||||||||| |||| |||||||||    
T  21631375 ataaataaccctcaccattgtact 21631352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 21631225 - 21631122
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||  ||||||        ||||||||||||||||||| |||||||||||||| ||    
T  21631225 tagtgagtaaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactaactcacccctataaataaccct 21631134  T
Q  394 catcattgtact 405  Q
    || || ||||||    
T  21631133 caccagtgtact 21631122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 511
Target Start/End: Original strand, 21464528 - 21464615
Alignment:
Q  426 tttctatctttgtcataactcctagag--agaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 511  Q
    |||||| |||||| || ||||||||||  |||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21464528 tttctacctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattctttgatt 21464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 9878384 - 9878298
Alignment:
Q  284 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagac 369  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||  | ||||| |||||| |||||||||||||    
T  9878384 actattagagtatagtgaataaaccataggtagttaatatataaactatggttagttgtat-gttagatagttaggagttagttagac 9878298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 3232944 - 3233025
Alignment:
Q  342 tggttaggtagttaagagttagttagactaactctcccctataaataactctcatcattgtactattttcatatcttttatt 423  Q
    |||||||||||||||||||| |||| ||||||||  || ||||||||||||||||||||||| | | ||  |||||||||||    
T  3232944 tggttaggtagttaagagtttgttacactaactcatccttataaataactctcatcattgtattttcttattatcttttatt 3233025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 21633179 - 21633093
Alignment:
Q  301 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctca 395  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||        ||||||||||||||| ||| |||||||||||||| ||||    
T  21633179 taaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactatctcacccctataaataaccctca 21633093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 29856150 - 29856101
Alignment:
Q  342 tggttaggtagttaagagttagttagactaactctcccctataaataact 391  Q
    |||||||||||||| ||||||||||||| ||||| |  ||||||||||||    
T  29856150 tggttaggtagttaggagttagttagaccaactcactactataaataact 29856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 28395667 - 28395559
Alignment:
Q  408 tttcatatcttttattcatttctatct----ttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatc 503  Q
    |||||||||||||||||||||||||||    |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28395667 tttcatatcttttattcatttctatctatctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatc 28395568  T
Q  504 ctttgattc 512  Q
    |||||||||    
T  28395567 ctttgattc 28395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 297 - 422
Target Start/End: Original strand, 42664932 - 42665057
Alignment:
Q  297 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcat 396  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||  |||||     
T  42664932 tgaataaaccatagttagttaatatgtaaactacggttagttggttgtttaggtagttaagagttagttagactaactcacccttataaatagttctcac 42665031  T
Q  397 cattgtactattttcatatcttttat 422  Q
     |||||||||| ||  ||||||||||    
T  42665032 aattgtactatcttgttatcttttat 42665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 10032785 - 10032679
Alignment:
Q  298 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatc 397  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||      
T  10032785 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagtcggttagactaactc-accctataaataactctcact 10032687  T
Q  398 attgtact 405  Q
    ||||||||    
T  10032686 attgtact 10032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 42665247 - 42665175
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta 366  Q
    ||||||||||||||||||||||||||||||||| |||||||||||   || ||||||||||||||||||||||    
T  42665247 tagtgaataaaccatagttagttaatatgtaaattatggttagttatttgtttaggtagttaagagttagtta 42665175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 18812774 - 18812702
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta 366  Q
    |||||||||||||||| |||| |||||||||||||||||||||||   | |||||||||||||||||||||||    
T  18812774 tagtgaataaaccataattagataatatgtaaactatggttagttacttagttaggtagttaagagttagtta 18812702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 451 - 519
Target Start/End: Complemental strand, 4847755 - 4847687
Alignment:
Q  451 agagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaacac 519  Q
    ||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  4847755 agagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcataacac 4847687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 18807599 - 18807515
Alignment:
Q  284 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 367  Q
    ||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||||   ||||||||||| ||||||||||||||    
T  18807599 actattagagtatagtgaataaaccataactagataatatgtaaactatggttagttacttggttaggtag-taagagttagttag 18807515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 5653358 - 5653307
Alignment:
Q  344 gttaggtagttaagagttagttagactaactctcccctataaataactctca 395  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||| |||||    
T  5653358 gttaggtagttaggagttagttatactaactcacccctataaataagtctca 5653307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 334
Target Start/End: Complemental strand, 19223181 - 19223142
Alignment:
Q  295 agtgaataaaccatagttagttaatatgtaaactatggtt 334  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  19223181 agtgaataaaccatagttagttaatatataaactatggtt 19223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 8818853 - 8818773
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactc 375  Q
    ||||||||||| ||| ||||||||||| ||||||||  ||| ||| | |||||| |||||||| | ||||||||||||||||    
T  8818853 tagtgaataaatcatggttagttaata-gtaaactagagtttgtttgttggttaagtagttaaaaattagttagactaactc 8818773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 8678562 - 8678640
Alignment:
Q  330 tggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatcattgtactatt 408  Q
    ||||| ||||| ||| ||||||||||  |||||||||| ||||| | ||||||||||||||| |||  ||| |||||||    
T  8678562 tggttggttggttggctaggtagttagcagttagttagtctaacccacccctataaataactttcactattatactatt 8678640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 294 - 403
Target Start/End: Original strand, 30488432 - 30488541
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactct 393  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||| ||||    
T  30488432 tagtgaataaaccatagttagttaatatgtaaattatggtttgttggttggttagatagttaaaagttagttagactaactcacccctataaatagctct 30488531  T
Q  394 catcattgta 403  Q
    || |||||||    
T  30488532 caccattgta 30488541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 400 - 519
Target Start/End: Original strand, 15689026 - 15689145
Alignment:
Q  400 tgtactattttc-atatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatg 498  Q
    |||||||||||| || | |||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  15689026 tgtactattttctatcttttttattcatttctatctttgtgatgactc-tagagagaattacacaatctatctttccattgcatttgacctagaatcatg 15689124  T
Q  499 gaatcctttgattcctaacac 519  Q
    |||||||||||||| ||||||    
T  15689125 gaatcctttgattcataacac 15689145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 25050859 - 25050932
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 367  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  25050859 tagtgaataaaccatagttagataatatgtaaactatggttagttacttggttaggtagttaagagttagttag 25050932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 9373707 - 9373599
Alignment:
Q  381 tataaataactctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgc 480  Q
    ||||||||||||| |  |||||||| | | || ||||||||||||||| ||||||||| || ||||||| ||| ||||||||| || |||||||||||||    
T  9373707 tataaataactcttacaattgtactctct-cacatcttttattcatttatatctttgttatgactcctatagaaaattacacattctatctttccattgc 9373609  T
Q  481 atttgaccta 490  Q
    ||||||||||    
T  9373608 atttgaccta 9373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 511
Target Start/End: Complemental strand, 34350452 - 34350341
Alignment:
Q  400 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 499  Q
    ||||||||||   |||||||||| || || | |||| || || ||||||| ||||||||||| || | || ||||| ||| |||||||||| ||||||||    
T  34350452 tgtactatttcactatcttttatacaattgtttcttagtaatgactcctaaagagaattacataaactatttttccgttgtatttgacctagaaccatgg 34350353  T
Q  500 aatcctttgatt 511  Q
    ||||||||||||    
T  34350352 aatcctttgatt 34350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 26857816 - 26857895
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaact 374  Q
    |||||||||| |||||||||| | ||  ||||| ||  |||| |||| |||||||||||||||||||||||||||||||||    
T  26857816 tagtgaataagccatagttagatgatg-gtaaattagagttaattggttggttaggtagttaagagttagttagactaact 26857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 284 - 394
Target Start/End: Complemental strand, 9205 - 9093
Alignment:
Q  284 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccct 381  Q
    ||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||| |||||||||| |||||||| |||||    
T  9205 actattagagtatagtgaataaaccatagttagtttatatgtgaactatggttagttgtttggttaggtagttaggagttagttacactaactcacccct 9106  T
Q  382 ataaataactctc 394  Q
    |||||||||||||    
T  9105 ataaataactctc 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 1284831 - 1284937
Alignment:
Q  298 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatc 397  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||      
T  1284831 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagttagttagactaactc-accctataaataactatcact 1284929  T
Q  398 attgtact 405  Q
    ||||||||    
T  1284930 attgtact 1284937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 519
Target Start/End: Complemental strand, 44782301 - 44782182
Alignment:
Q  400 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 499  Q
    ||||||||||   |||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  44782301 tgtactatttcattatcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatgg 44782202  T
Q  500 aatcctttgattcctaacac 519  Q
    |||||||| |||| ||||||    
T  44782201 aatcctttaattcataacac 44782182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 414 - 518
Target Start/End: Original strand, 46679708 - 46679812
Alignment:
Q  414 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 513  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||     
T  46679708 atcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattca 46679807  T
Q  514 taaca 518  Q
    |||||    
T  46679808 taaca 46679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 33072760 - 33072845
Alignment:
Q  319 tatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatcattgtact 405  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||| |||||||||||||||  ||||||||    
T  33072760 tatgtaaactatggttagttggttggttaggtagttaagagttagttag-ctgactcacccttataaataactctcactattgtact 33072845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 10653488 - 10653594
Alignment:
Q  295 agtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctc 394  Q
    ||||||||||  |||||||||| ||| ||||| |||||||||||||    |||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  10653488 agtgaataaagtatagttagtttatacgtaaattatggttagttgg----ttaggtggttaagagttagttagactaactcacccctgtaaatagctctc 10653583  T
Q  395 atcattgtact 405  Q
    |  ||||||||    
T  10653584 acaattgtact 10653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 41892084 - 41892178
Alignment:
Q  294 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataa 389  Q
    |||||||||||||| |||||||| ||| || || |||| |||||||| |||||||||||||  |||||||||| |||||||| |||||||||||||    
T  41892084 tagtgaataaacca-agttagttgataggtgaagtatgattagttggttggttaggtagttgggagttagttatactaactcacccctataaataa 41892178  T

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Target: scaffold0245 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 9476 - 9582
Alignment:
Q  298 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatc 397  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||  |||||||||||||| |||      
T  9476 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactc-accctataaataactatcact 9574  T
Q  398 attgtact 405  Q
    ||||||||    
T  9575 attgtact 9582  T

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Target: scaffold0245; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 11098 - 11204
Alignment:
Q  298 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatc 397  Q
    ||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||      
T  11098 gaataaaccatagttagttgagatataaactatggttagttggttggttaggtagttaagagttagttagactaactc-accctataaataactatcact 11196  T
Q  398 attgtact 405  Q
    ||||||||    
T  11197 attgtact 11204  T

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Target: scaffold0229 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 9804 - 9910
Alignment:
Q  298 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactctcccctataaataactctcatc 397  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||  |||||||||||||| |||      
T  9804 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactc-accctataaataactatcact 9902  T
Q  398 attgtact 405  Q
    ||||||||    
T  9903 attgtact 9910  T

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Target: scaffold0160 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 28412 - 28490
Alignment:
Q  297 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactc 375  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||   |||||||||||||||||| ||||||    
T  28412 tgaataaaccatagttagttgataggtaaactatggttagttggttggttatacagttaagagttagttagattaactc 28490  T

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