View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7859_high_2 (Length: 360)
Name: NF7859_high_2
Description: NF7859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7859_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 40511629 - 40511303
Alignment:
| Q |
18 |
catagagtttatgagttttgcttatgtggccgtgggtgagccattttccaaggtaacaatcatggcggccatttatgtagcaccgactctcctgatcgaa |
117 |
Q |
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| T |
40511629 |
catagaatttatgagttttgcttatgtggccgtgggtgagccattttccaaggtaacaatcatggcggccatttatgtagcaccgactctcctgatcgaa |
40511530 |
T |
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| Q |
118 |
taagtaccgtatttgatactaacatgacacgaccctgatatatatggttacattcaatctttttcaatttttgtatatttttattggcgtcaaggtgttg |
217 |
Q |
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| T |
40511529 |
taagtaccgtatttgatactaacatgacacgaccctgatatatatggttacattcaatctttttcaatttttgtatatttttattggcgtcgaggtgttg |
40511430 |
T |
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| Q |
218 |
gtgtcaatattgtgtcatgtgtccatgcccatggcaaaacatagtggcaacgtatagtgactaaaacttagaactattttacatttttattgctttatcc |
317 |
Q |
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| T |
40511429 |
gtgtcaatattgtgtcatgtgtctatgcccatggcaaaacatagtgg---------gtgactaaaacttacaactattttacatttttattgctttatcc |
40511339 |
T |
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| Q |
318 |
ccttactttaatccaattgagatggtgttcttctca |
353 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40511338 |
ccttactttaatccaattgagatggtgttcttctca |
40511303 |
T |
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