View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7859_high_3 (Length: 345)
Name: NF7859_high_3
Description: NF7859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7859_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 33954756 - 33954426
Alignment:
| Q |
5 |
cattatacacatttgatattggtcaaaatgacttggcatccggttacttccacaacatgtccataaatcaagttaaagcatatgttcctgatgttctgga |
104 |
Q |
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| T |
33954756 |
cattatacacatttgatattggtcaaaatgacttggcatccggttacttccacaacatgtccataaatcaagttaaagcatatgttcctgatgttctgga |
33954657 |
T |
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| Q |
105 |
tcaattcaagaacacaatcaaggtaataatccattttgatttttgatgcaattgctataaagaaattatagttgtagcaattaagctaatgtgtaacata |
204 |
Q |
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| T |
33954656 |
tcaattcaagaacacaatcaaggtaataatccattttgatttttgatgcaattgctataaagaaattatagttgtagcaattaagctaatgtgtaacata |
33954557 |
T |
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| Q |
205 |
acatacatgtttgtctaaatgttgccattgatgtatagaatatatatgctcatggaggaagatcattttggattcacaatactggtcctgttggttgttt |
304 |
Q |
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| T |
33954556 |
acatacatgtttgtctaaatgttgctattgatgtatagaatatatatgctcatggaggaagatcattttggattcacaatactggtcctgttggttgttt |
33954457 |
T |
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| Q |
305 |
gccatacatcattgaacttcacaaagtaaca |
335 |
Q |
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| T |
33954456 |
gccatacatcattgaacttcacaaagtaaca |
33954426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 10502776 - 10502804
Alignment:
| Q |
7 |
ttatacacatttgatattggtcaaaatga |
35 |
Q |
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| T |
10502776 |
ttatacacatttgatattggtcaaaatga |
10502804 |
T |
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