View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7859_high_5 (Length: 310)
Name: NF7859_high_5
Description: NF7859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7859_high_5 |
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| [»] scaffold0027 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 24368077 - 24367793
Alignment:
| Q |
9 |
tcgtgttagcactagtgaatggttctaatgcaggaaaaattgcaatctactggggccagaacggaaacgagggcacgttagctgaggcttgtgccacagg |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24368077 |
tcgtgttagcactagcgaatggttctaatgcaggaaaaattgcaatctactggggccagaacggaaacgagggcacgttagctgaggcttgtgccacagg |
24367978 |
T |
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| Q |
109 |
caactatgaatatgtgatcatagccttcttaccgaccttcggagacggccaaactccgatgattaatctagctggtcattgtgatccatacagtaatgga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24367977 |
aaactatgaatatgtgatcatagccttcttaccgaccttcggagatggccaaactccgatgattaatctagctggtcattgtgatccatacagtaatgga |
24367878 |
T |
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| Q |
209 |
tgcactggcttaagctcagacataaagtcatgtcaagccaaaggcatcaaagtattgttgtcaataggaggaggtgctggaagct |
293 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
24367877 |
tgcactggcttaagctcagacatcaagtcatgtcaagccaaaggaatcaaagtattgttgtcgataggaggaggtgctggaagct |
24367793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 24455682 - 24455565
Alignment:
| Q |
30 |
gttctaatgcaggaaaaattgcaatctactggggccagaacggaaacgagggcacgttagctgaggcttgtgccacaggcaactatgaatatgtgatcat |
129 |
Q |
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|||| ||||| || ||||||| |||||| |||||||| || || || || ||| ||||||| || ||||||||||| | |||||||||||||||||||| |
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| T |
24455682 |
gttcaaatgctggcaaaattgtaatctattggggccaaaatggtaatgaaggctcgttagccgaaacttgtgccacaagaaactatgaatatgtgatcat |
24455583 |
T |
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| Q |
130 |
agccttcttaccgacctt |
147 |
Q |
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| T |
24455582 |
agctttcttaccaacctt |
24455565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 26 - 293
Target Start/End: Original strand, 148336 - 148603
Alignment:
| Q |
26 |
aatggttctaatgcaggaaaaattgcaatctactggggccagaacggaaacgagggcacgttagctgaggcttgtgccacaggcaactatgaatatgtga |
125 |
Q |
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|||| ||||||||| || |||||| |||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
148336 |
aatgattctaatgctggcaaaatttcaatttattggggccagaatggaaacgagggcacgttagccgaggcttgtgccacagggaactacgaatatgtga |
148435 |
T |
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| Q |
126 |
tcatagccttcttaccgaccttcggagacggccaaactccgatgattaatctagctggtcattgtgatccatacagtaatggatgcactggcttaagctc |
225 |
Q |
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|||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| |
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| T |
148436 |
tcatagccttcttaccaaccttcggtgatggccaaactccaatgatcaatctagctggtcattgcgatccatacagcaacgagtgcactggcttaagctc |
148535 |
T |
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| Q |
226 |
agacataaagtcatgtcaagccaaaggcatcaaagtattgttgtcaataggaggaggtgctggaagct |
293 |
Q |
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| T |
148536 |
agacatcaaatcatgtcaagccaaaggcatcaaagtattgttgtcattaggaggaggtgctggaagct |
148603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 281
Target Start/End: Complemental strand, 19136360 - 19136177
Alignment:
| Q |
98 |
tgtgccacaggcaactatgaatatgtgatcatagccttcttaccgaccttcggagacggccaaactccgatgattaatctagctggtcattgtgatccat |
197 |
Q |
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||||||||||| |||| ||||||||| ||| ||||||| |||| || || ||| | || |||| || ||||| |||||||| || ||||||||||||| |
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| T |
19136360 |
tgtgccacagggaactttgaatatgttatcttagcctttctaccaacatttggaaatggacaaaaaccaatgataaatctagcaggacattgtgatccat |
19136261 |
T |
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| Q |
198 |
acagtaatggatgcactggcttaagctcagacataaagtcatgtcaagccaaaggcatcaaagtattgttgtcaataggaggag |
281 |
Q |
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||||||| ||||| |||| ||| ||||| || || || ||||| ||||||||||| || ||||| || |||||||||| |
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| T |
19136260 |
acagtaacacttgcacaaagttaacctctgacattaaatcctgccaagcaaaaggcatcaaggtgttgttatcgataggaggag |
19136177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 47980001 - 47980117
Alignment:
| Q |
179 |
gctggtcattgtgatcca--tacagtaatggatgcactggcttaagctcagacataaagtcatgtcaagccaaaggcatcaaag-tattgttgtcaatag |
275 |
Q |
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||||||||||||||| || || |||||||||||||| ||||| | |||||||||||||||||| ||||||| || |||| |||| || ||||| | |
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| T |
47980001 |
gctggtcattgtgatgcacatatagtaatggatgcaccaaaataagcgctgacataaagtcatgtcaatccaaaggaattaaagttattctt-tcaattg |
47980099 |
T |
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| Q |
276 |
gaggaggtgctggaagct |
293 |
Q |
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|||| ||||||||||||| |
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| T |
47980100 |
gaggtggtgctggaagct |
47980117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 455779 - 455682
Alignment:
| Q |
103 |
cacaggcaactatgaatatgtgatcatagccttcttaccgaccttcggagacggccaaactccgatgattaatctagctggtcattgtgatccataca |
200 |
Q |
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|||||| |||||||||| ||| ||| |||||||||| || || || | | | ||||||| || ||||| |||||||| || |||||||||||||||| |
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| T |
455779 |
cacagggaactatgaatttgttatcttagccttctttccaacatttgaaaatggccaaaaaccaatgataaatctagcaggacattgtgatccataca |
455682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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