View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7859_low_1 (Length: 526)
Name: NF7859_low_1
Description: NF7859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7859_low_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 526
Target Start/End: Complemental strand, 14598480 - 14597972
Alignment:
| Q |
20 |
aggagctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcct |
119 |
Q |
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| T |
14598480 |
aggagctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcct |
14598381 |
T |
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| Q |
120 |
gattcttactttgcgttaaaaatggatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaagggtgaaaagggagtacgatgagttca |
219 |
Q |
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| T |
14598380 |
gattcttactttgcgttaaaaatcgatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaagggtgaaaagggagtacgatgagttca |
14598281 |
T |
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| Q |
220 |
aagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatgaagatgatgaagcatttgaaggagactgg |
319 |
Q |
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| T |
14598280 |
aagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatgaagatgatgaagcatttgaaggagactgg |
14598181 |
T |
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| Q |
320 |
ggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccggcacttggggttcttcttctagggaacatgct |
419 |
Q |
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| T |
14598180 |
ggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggcccggcacttggggttcttcttctagcgaacatgct |
14598081 |
T |
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| Q |
420 |
aaaggtgaccatgccggaatacttcaggtatttactcatatat--tatacctaagaataaattcaatcctgaactttaacttatgtttcacatatatatc |
517 |
Q |
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| T |
14598080 |
aaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaattcaatcctgaactttaacttatgtttcacatatatttc |
14597981 |
T |
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| Q |
518 |
ataatttaa |
526 |
Q |
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| T |
14597980 |
ataatttaa |
14597972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 45 - 480
Target Start/End: Original strand, 14610021 - 14610456
Alignment:
| Q |
45 |
atggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcgttaaaaatgg |
144 |
Q |
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| T |
14610021 |
atggctgaggctgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcg |
14610120 |
T |
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| Q |
145 |
atccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaagggtgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctga |
244 |
Q |
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| T |
14610121 |
atccaactaagaacaagagcagattagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccgga |
14610220 |
T |
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| Q |
245 |
ttctattaggagaagatctgatgcatttaatgcaagagaggaaatgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaa |
344 |
Q |
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| T |
14610221 |
gtcaattaggagaagatctgatgcatttaacgcaagggaggaaatgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaag |
14610320 |
T |
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| Q |
345 |
gtattaaaggccacttggatggctgatggcacccattggcccggcacttggggttcttcttctagggaacatgctaaaggtgaccatgccggaatacttc |
444 |
Q |
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||| ||||||| || |||||||||||||||||||||||||| || || |||| |||||||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
14610321 |
gtaataaaggctacctggatggctgatggcacccattggcctggtacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttc |
14610420 |
T |
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| Q |
445 |
aggtatttactcatatattatacctaagaataaatt |
480 |
Q |
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| T |
14610421 |
aggtattttcttgtgtattatatctaagaataaatt |
14610456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 41491889 - 41491819
Alignment:
| Q |
51 |
gaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctga |
121 |
Q |
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| T |
41491889 |
gaggcagcaagttttgctgatttgtgggttccattttgtcggaagcacaacattgacctaaggaaccctga |
41491819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 12194773 - 12194677
Alignment:
| Q |
35 |
ttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttacttt |
131 |
Q |
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| T |
12194773 |
ttttgaggccatggccgaggcagcaagttttgcggagttgtgggttcctttttgtcggaagcacgacattgaaccaaggaacccggaatcttacttt |
12194677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 15419432 - 15419374
Alignment:
| Q |
72 |
ttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactt |
130 |
Q |
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| T |
15419432 |
ttatgggtaccattttgtcgaaaacacaatatcgaaccaaggaatccagatgcttactt |
15419374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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