View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7859_low_2 (Length: 427)
Name: NF7859_low_2
Description: NF7859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7859_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 40929500 - 40929900
Alignment:
| Q |
12 |
gacatcagttcccttttaagagtgcgtaagaaaatgctaataaactgaaaaacaaagctgagtaagaggctgaaaaacttgagagttctaaaaaacattg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929500 |
gacatcagttcccttttaagagtgcgtaagaaaatgctaataaactgaaaaacaaagctgagtaagaggctgaaaaacttgagagttctaaaaaacattg |
40929599 |
T |
|
| Q |
112 |
tgatattttggagaaatcaaaccgaagtctcaagttagaggctgaaaacttggtgcaaaagatagcattgaaagatcatgagcttctagagaagcatact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929600 |
tgatattttggagaaatcaaaccgaagtctcaagttagaggctgaaaacttggtgcaaaagatagcattgaaagatcatgagcttctagagaagcatact |
40929699 |
T |
|
| Q |
212 |
aagatagagactgaaaactctgatgcgcggagaacactccaactttattcaaattgaatcggctctagtgctctacagactctgcagaagttgtactctc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929700 |
aagatagagactgaaaactctgatgcgcggagaacactccaactttattcaaattgaatcggctctagtgctctacagactctgcagaagttgtactctc |
40929799 |
T |
|
| Q |
312 |
aatcacaacaggaacaaagaatttttgctttggagcttaaatatgggcttctgctgttgaatgacttggatcttcccaaacaaggttttaaggaagaggt |
411 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929800 |
aatcacaacaggagcaaagaatttttgctttggagcttaaatatgggcttctgctgttgaatgacttggatcttcccaaacaaggttttaaggaagaggt |
40929899 |
T |
|
| Q |
412 |
g |
412 |
Q |
| |
|
| |
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|
| T |
40929900 |
g |
40929900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 54 - 409
Target Start/End: Complemental strand, 944861 - 944512
Alignment:
| Q |
54 |
aactgaaaaacaaagctgagtaagaggctgaaaaacttgagagttctaaaaaacattgtgatattttggagaaatcaaaccgaagtctcaagttagaggc |
153 |
Q |
| |
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|||| ||||||||| ||| ||||||||||||||||||||| |||| |||||||| ||| ||| |||||||||||||||| || ||| |||||||||| |
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| T |
944861 |
aactaaaaaacaaaattgaaaaagaggctgaaaaacttgagatttctgaaaaacatcgtggtatgttggagaaatcaaaccaaaatcttcagttagaggc |
944762 |
T |
|
| Q |
154 |
tgaaaacttggtgcaaaagatagcattgaaagatcatgagcttctagagaagcatactaagat--agagactgaaaactctgatgcgcggagaacactcc |
251 |
Q |
| |
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|||||| || ||||| | |||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||| || || |
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| T |
944761 |
tgaaaatttagtgcagaggatagcatcgaaagatcatgagcttctagagaagcatactgagatagagagactgcaaactctgatgcatggagagcattct |
944662 |
T |
|
| Q |
252 |
aactttattcaaattgaatcggctctagtgctctacagactctgcagaagttgtactctcaatcacaacaggaacaaagaatttttgctttggagcttaa |
351 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||||| | |||||||||||||||| |
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| T |
944661 |
aactttattcaaattgaatc--------agctctacaggctctgcaaaagttgtactctcaatcacaaaaggagcaaagaaatcttgctttggagcttaa |
944570 |
T |
|
| Q |
352 |
atatgggcttctgctgttgaatgacttggatcttcccaaacaaggttttaaggaagag |
409 |
Q |
| |
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|||||||||||| |||||||| |||||||| ||| ||||||||| ||||||||||||| |
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|
| T |
944569 |
atatgggcttcttctgttgaaggacttggaactttccaaacaagattttaaggaagag |
944512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 408
Target Start/End: Complemental strand, 46662024 - 46661898
Alignment:
| Q |
282 |
ctctacagactctgcagaagttgtactctcaatcacaacaggaacaaagaatttttgctttggagcttaaatatgggcttctgctgttgaatgacttgga |
381 |
Q |
| |
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|||| ||||||||||| || | ||||||||| |||||| |||| ||||| | ||||||||||||||||| | ||||||| ||||||| | ||| |||| |
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| T |
46662024 |
ctctgcagactctgcaaaactcgtactctcagtcacaagaggagcaaaggtctcttgctttggagcttaaacacgggcttcagctgttggaggacctgga |
46661925 |
T |
|
| Q |
382 |
tcttcccaaacaaggttttaaggaaga |
408 |
Q |
| |
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||| ||||| | ||||| || ||||| |
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|
| T |
46661924 |
actttccaaaaagggtttcaaagaaga |
46661898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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