View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7859_low_3 (Length: 426)

Name: NF7859_low_3
Description: NF7859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7859_low_3
NF7859_low_3
[»] chr3 (26 HSPs)
chr3 (12-335)||(33309417-33309740)
chr3 (234-331)||(33309948-33310043)
chr3 (367-422)||(39300641-39300696)
chr3 (354-426)||(33309771-33309837)
chr3 (281-333)||(16024805-16024857)
chr3 (367-422)||(46795685-46795740)
chr3 (267-331)||(49745736-49745799)
chr3 (281-331)||(1742004-1742054)
chr3 (242-327)||(17321880-17321964)
chr3 (354-414)||(28259915-28259975)
chr3 (355-406)||(27201678-27201729)
chr3 (280-330)||(5411845-5411895)
chr3 (241-331)||(54141374-54141462)
chr3 (242-331)||(16024520-16024607)
chr3 (241-333)||(25370307-25370397)
chr3 (360-415)||(8078403-8078458)
chr3 (280-331)||(9690226-9690277)
chr3 (284-331)||(34062795-34062842)
chr3 (256-310)||(45472210-45472263)
chr3 (257-331)||(51107969-51108042)
chr3 (356-413)||(1935163-1935220)
chr3 (263-328)||(18360669-18360733)
chr3 (282-331)||(25693333-25693382)
chr3 (267-331)||(25695047-25695110)
chr3 (366-414)||(51107796-51107844)
chr3 (280-324)||(54394342-54394386)
[»] chr7 (16 HSPs)
chr7 (255-331)||(14584938-14585013)
chr7 (255-331)||(15998808-15998883)
chr7 (355-421)||(25245360-25245426)
chr7 (358-426)||(33998683-33998751)
chr7 (355-414)||(30218948-30219007)
chr7 (241-329)||(30219031-30219117)
chr7 (281-331)||(18503602-18503652)
chr7 (256-334)||(30218760-30218837)
chr7 (256-325)||(39187701-39187769)
chr7 (356-408)||(33237121-33237173)
chr7 (281-329)||(33998854-33998902)
chr7 (354-397)||(39187544-39187587)
chr7 (283-329)||(26241524-26241570)
chr7 (242-331)||(33005135-33005223)
chr7 (256-320)||(2195364-2195426)
chr7 (354-414)||(33004952-33005012)
[»] scaffold0275 (1 HSPs)
scaffold0275 (367-422)||(9087-9142)
[»] chr5 (25 HSPs)
chr5 (367-422)||(30641729-30641784)
chr5 (257-331)||(36599832-36599907)
chr5 (256-331)||(26032259-26032333)
chr5 (238-311)||(36060759-36060830)
chr5 (242-331)||(40972122-40972209)
chr5 (354-414)||(38445888-38445948)
chr5 (256-328)||(40971851-40971922)
chr5 (281-327)||(7630624-7630670)
chr5 (281-329)||(756924-756972)
chr5 (354-414)||(15304445-15304505)
chr5 (243-331)||(38445969-38446055)
chr5 (256-327)||(30856376-30856446)
chr5 (360-415)||(38142486-38142541)
chr5 (361-411)||(21034823-21034873)
chr5 (240-329)||(18258048-18258135)
chr5 (354-411)||(26032354-26032411)
chr5 (354-411)||(36060661-36060718)
chr5 (279-331)||(17436472-17436524)
chr5 (366-426)||(32892308-32892368)
chr5 (245-307)||(12542110-12542170)
chr5 (281-331)||(21034658-21034708)
chr5 (355-411)||(17436638-17436694)
chr5 (354-414)||(18257966-18258026)
chr5 (367-411)||(41863575-41863619)
chr5 (367-415)||(41908991-41909039)
[»] chr4 (28 HSPs)
chr4 (367-422)||(48798541-48798596)
chr4 (354-422)||(41609229-41609297)
chr4 (256-334)||(24789662-24789739)
chr4 (256-334)||(24818520-24818597)
chr4 (281-331)||(17947289-17947339)
chr4 (355-415)||(24789755-24789814)
chr4 (355-415)||(24818445-24818504)
chr4 (256-331)||(51203232-51203306)
chr4 (356-422)||(5521412-5521478)
chr4 (354-414)||(31792776-31792836)
chr4 (256-331)||(11692162-11692236)
chr4 (240-331)||(52131904-52131993)
chr4 (256-310)||(5521527-5521580)
chr4 (280-334)||(33414292-33414346)
chr4 (356-422)||(41823728-41823794)
chr4 (256-321)||(2478946-2479010)
chr4 (358-394)||(7504873-7504909)
chr4 (281-333)||(33413860-33413912)
chr4 (280-328)||(44340962-44341010)
chr4 (256-331)||(31792635-31792709)
chr4 (281-324)||(36620950-36620993)
chr4 (256-310)||(38851985-38852038)
chr4 (354-404)||(51203326-51203376)
chr4 (280-329)||(5521244-5521293)
chr4 (354-423)||(52132012-52132081)
chr4 (354-414)||(4120051-4120111)
chr4 (256-304)||(6732854-6732901)
chr4 (367-415)||(44340791-44340839)
[»] chr6 (6 HSPs)
chr6 (354-422)||(3014381-3014449)
chr6 (245-331)||(3014545-3014630)
chr6 (366-416)||(353463-353513)
chr6 (360-414)||(1428884-1428938)
chr6 (256-331)||(4096770-4096844)
chr6 (354-414)||(34707662-34707721)
[»] chr2 (32 HSPs)
chr2 (359-422)||(24895646-24895709)
chr2 (240-331)||(35665323-35665412)
chr2 (356-421)||(30956143-30956208)
chr2 (354-414)||(37866483-37866543)
chr2 (277-331)||(578464-578518)
chr2 (256-330)||(7693578-7693651)
chr2 (241-331)||(7876157-7876245)
chr2 (281-326)||(578246-578291)
chr2 (256-321)||(17642612-17642676)
chr2 (356-413)||(42479981-42480038)
chr2 (354-414)||(37149282-37149341)
chr2 (354-409)||(578397-578452)
chr2 (355-414)||(1944092-1944151)
chr2 (256-331)||(12496857-12496930)
chr2 (256-331)||(28191451-28191525)
chr2 (284-331)||(35665588-35665635)
chr2 (356-414)||(12496781-12496839)
chr2 (366-415)||(7895387-7895436)
chr2 (354-411)||(11763960-11764017)
chr2 (282-331)||(25954751-25954800)
chr2 (245-325)||(11763738-11763817)
chr2 (279-331)||(12926540-12926592)
chr2 (280-331)||(1944173-1944224)
chr2 (355-414)||(7876267-7876326)
chr2 (281-328)||(37149211-37149258)
chr2 (242-324)||(24895742-24895822)
chr2 (239-304)||(7876469-7876532)
chr2 (356-397)||(34196761-34196802)
chr2 (238-331)||(43281559-43281649)
chr2 (354-415)||(43281670-43281731)
chr2 (241-328)||(10439507-10439591)
chr2 (354-414)||(27002758-27002817)
[»] chr8 (12 HSPs)
chr8 (367-426)||(22210143-22210202)
chr8 (354-426)||(23757484-23757558)
chr8 (355-414)||(33758038-33758097)
chr8 (281-331)||(15249585-15249635)
chr8 (281-331)||(23757322-23757372)
chr8 (243-324)||(23757586-23757666)
chr8 (281-329)||(36128635-36128683)
chr8 (355-414)||(13515457-13515516)
chr8 (355-414)||(13604990-13605049)
chr8 (281-331)||(158739-158789)
chr8 (281-331)||(22209994-22210044)
chr8 (256-310)||(33657592-33657645)
[»] chr1 (15 HSPs)
chr1 (256-327)||(1691546-1691616)
chr1 (240-331)||(14397986-14398075)
chr1 (281-331)||(10840486-10840535)
chr1 (281-327)||(33261725-33261771)
chr1 (281-327)||(33281884-33281930)
chr1 (366-411)||(10840344-10840389)
chr1 (239-327)||(33261979-33262065)
chr1 (239-327)||(33282138-33282224)
chr1 (355-414)||(14398096-14398155)
chr1 (256-326)||(7435394-7435462)
chr1 (281-331)||(27086251-27086301)
chr1 (281-329)||(14398280-14398328)
chr1 (288-331)||(27085997-27086041)
chr1 (354-414)||(33261897-33261957)
chr1 (354-414)||(33282056-33282116)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 335
Target Start/End: Original strand, 33309417 - 33309740
Alignment:
Q  12 catcagtgttttgctactttaaccatattgctccacatgtatgtatcctcttaataggtgtagagcgatctgaagctgttgctagaggtgctgatttaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33309417 catcagtgttttgctactttaaccatattgctccacatgtatgtatcctcttaataggtgtagagcgatctgaagctgttgctagaggtgctgatttaat 33309516  T
Q  112 tatcatgactgtgagtgctgttgaagggtggacttctgaagacaccaaacttcttgaaaggattcaatccgctaaggttttgcctcaattatctttattc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33309517 tatcatgactgtgagtgctgttgaagggtggacttctgaagacaccaaacttcttgaaaggattcaatccgctaaggttttgcctcaattatctttattc 33309616  T
Q  212 catttagtactcttgttcatgatatttaatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33309617 catttagtactcttgttcatgatatttaatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaac 33309716  T
Q  312 gggatgttttcatcctcacataac 335  Q
    ||||||||||||||||||||||||    
T  33309717 gggatgttttcatcctcacataac 33309740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 33310043 - 33309948
Alignment:
Q  234 tatttaatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||| |||||||||||| |||||||| | |||||||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  33310043 tattaaatagggttaaataagttttt-cttccctaaatatata-gcgaatttttattttagtccctaaaaaataaaacggggtgttttcatcctcaca 33309948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 39300641 - 39300696
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39300641 caatttatgttcatattaatgtcaagattatcactcttttatgttcaagatgtatc 39300696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 33309771 - 33309837
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatctatg 426  Q
    ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||||||    
T  33309771 ggtccttaatggccaatttatgtt------aatgtcaagattatcactcttttatgttcaagatgtatctatg 33309837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 16024857 - 16024805
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacata 333  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  16024857 aattttgattttagtccctaaaaaataaaatgagatgttttcatcctcacata 16024805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 46795740 - 46795685
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||    
T  46795740 caatttatgctcatattaatgtcaatattatcactcttttatgttcaagatgtatc 46795685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 49745736 - 49745799
Alignment:
Q  267 taaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||| |||||||||||||||||   |||||||||||||||||||||||||| ||||||    
T  49745736 taaaaatataa-tgaattttgattttagtatttaaaaaataaaacgggatgttttcattctcaca 49745799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 1742004 - 1742054
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  1742004 aattttgattttaatccctaaaaaataaaatgagatgttttcatcctcaca 1742054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 17321964 - 17321880
Alignment:
Q  242 agggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    ||||||||| ||||||||||||||||| ||||||||  | |||||||||| ||||| || ||||||||||| | || |||||||||    
T  17321964 agggttaaataagttttttcgtccctataaatataacag-attttgatttcagtccttataaaataaaacgaggtgctttcatcct 17321880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 28259975 - 28259915
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||| ||||||||||||||||||  ||| |||||||||||||| |||||||||| |||||    
T  28259975 ggtccctaatggccaatttatgttattatgaatgtcaagattatgactcttttattttcaa 28259915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 27201678 - 27201729
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactctttt 406  Q
    |||||||||| | ||||||||||||||||||||| |||||||||| ||||||    
T  27201678 gtccttaatgactaatttatgttcatattaatgttaagattatcattctttt 27201729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 5411845 - 5411895
Alignment:
Q  280 gaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcac 330  Q
    ||||||| |||||||||| || |||||||||| ||||||||||||||||||    
T  5411845 gaatttttattttagtccttataaaataaaactggatgttttcatcctcac 5411895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 54141374 - 54141462
Alignment:
Q  241 tagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||| |||||||| | ||| |||||||||| | ||||||||||| |||| | ||||||||||||  | |||||||||||||||||    
T  54141374 tagggttaaataagttttt-cttccataaaaatata-gcgaattttgattgtagttcttaaaaaataaaattgaatgttttcatcctcaca 54141462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 16024520 - 16024607
Alignment:
Q  242 agggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||| |||||||| |||| | | ||||||| | |||||||||||||| |||||||||||| |||| | ||||||||||| |||||    
T  16024520 agggttaaataagttttt-cgtctcaataaatata-gcgaattttgattttaatccctaaaaaattaaactgaatgttttcatcttcaca 16024607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 25370307 - 25370397
Alignment:
Q  241 tagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacata 333  Q
    |||||||||| |||||||||  |  | ||||||||||  |||||||||||| |||||||||||||||||| ||| || ||||||||| |||||    
T  25370307 tagggttaaataagtttttttttttcaaaaaatataac-gaattttgattt-agtccctaaaaaataaaatgggttggtttcatccttacata 25370397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 8078403 - 8078458
Alignment:
Q  360 taatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    ||||||||||||||| | ||||| |||||||| ||||  |||||||||||||||||    
T  8078403 taatggccaatttatttacatatgaatgtcaacattacgactcttttatgttcaag 8078458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 9690226 - 9690277
Alignment:
Q  280 gaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||| ||||| |||||||||||||||||  | |||||||||||||||||    
T  9690226 gaattttaatttttgtccctaaaaaataaaaatgaatgttttcatcctcaca 9690277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 34062842 - 34062795
Alignment:
Q  284 tttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||| |||||||||||||||||  ||| ||||||||||||||    
T  34062842 tttgattttaatccctaaaaaataaaacatgatattttcatcctcaca 34062795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 45472263 - 45472210
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaa 310  Q
    ||||| |||||||||||| || ||||||||| |||||||||| ||||||||||||    
T  45472263 tttttagtccctaaaaattta-gtgaattttaattttagtccttaaaaaataaaa 45472210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 51108042 - 51107969
Alignment:
Q  257 ttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||| ||||||| ||||||||  || ||||||||||||||| |||||||||||||  | |||||||||| |||||    
T  51108042 ttttagtccctataaatataacaga-ttttgattttagtccttaaaaaataaaacaaggtgttttcatcatcaca 51107969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 1935163 - 1935220
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttca 413  Q
    |||||||| |||| ||||||||||| | |||||||||||||| || ||||||| ||||    
T  1935163 tccttaattgccactttatgttcatgtgaatgtcaagattataacacttttatattca 1935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 18360669 - 18360733
Alignment:
Q  263 tccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctc 328  Q
    |||||||||||||| |||||||||||||||| |||| |||||  |||| | |||||||| ||||||    
T  18360669 tccctaaaaatata-gtgaattttgattttaatcccaaaaaataaaaatgagatgtttttatcctc 18360733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 25693333 - 25693382
Alignment:
Q  282 attttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||| |||| || ||||||||||| | ||||||||||||||||    
T  25693333 attttgattttggtccttataaaataaaacgaggtgttttcatcctcaca 25693382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 25695110 - 25695047
Alignment:
Q  267 taaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||| | |||||||||||||||| |||||||||| ||||   |||||||||| ||||||    
T  25695110 taaaaatata-gcgaattttgattttagtgcctaaaaaattaaacaaaatgttttcattctcaca 25695047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 51107796 - 51107844
Alignment:
Q  366 ccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||| || |||| |||||||||||||| | ||||||||||||||    
T  51107796 ccaatttattttaatatgaatgtcaagattatgagtcttttatgttcaa 51107844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 54394342 - 54394386
Alignment:
Q  280 gaattttgattttagtccctaaaaaataaaacgggatgttttcat 324  Q
    ||||||||||||||||||||||||||| |||  | ||||||||||    
T  54394342 gaattttgattttagtccctaaaaaattaaattgaatgttttcat 54394386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 14584938 - 14585013
Alignment:
Q  255 ttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  14584938 ttttttcgtctctaaaaatataa-taaattttgattttagtccctaaaaaataaaacgtgatgttttcatcatcaca 14585013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 15998808 - 15998883
Alignment:
Q  255 ttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  15998808 ttttttcgtctctaaaaatata-gtaaattttgattttagtccctaaaaaataaaacgtgatgttttcatcatcaca 15998883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 25245426 - 25245360
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtat 421  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| |||||    
T  25245426 gtccttaatggcctatttatgttcatataaatgtcaagattataactcttttatgatcaagatgtat 25245360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 33998683 - 33998751
Alignment:
Q  358 cttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatctatg 426  Q
    |||||||| || ||||||||||||| |||||||||||||| ||| ||||||||||||  ||||||||||    
T  33998683 cttaatggtcactttatgttcatatgaatgtcaagattataacttttttatgttcaaattgtatctatg 33998751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 30219007 - 30218948
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||||||||||||| ||||| ||||||| |||||||| ||||| ||||||||||||||||    
T  30219007 gtccttaatggccattttattttcatataaatgtcaaaattataactcttttatgttcaa 30218948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 30219117 - 30219031
Alignment:
Q  241 tagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    |||||||||| |||||||| ||||| || ||||||| | ||||||||||||||||||||| ||||  |||| | |||||||||||||||    
T  30219117 tagggttaaataagttttt-cgtccttataaatata-gcgaattttgattttagtccctacaaaactaaactgaatgttttcatcctca 30219031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 18503602 - 18503652
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  18503602 aattttgatttttatccctaaaaaataaaatgagatgttttcatcctcaca 18503652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 30218760 - 30218837
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacataa 334  Q
    |||||||||| || ||||||||  |||||||||||||| | |||| ||||| |||| | ||||||||||||||||||||    
T  30218760 tttttcgtccatataaatataac-gaattttgattttaattcctataaaattaaactgaatgttttcatcctcacataa 30218837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 39187769 - 39187701
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatc 325  Q
    |||||||| |||| |||||||| ||||||||||||||||||  || ||||||||| | ||||||||||||    
T  39187769 tttttcgttcctataaatataa-tgaattttgattttagtctttagaaaataaaatgagatgttttcatc 39187701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 33237173 - 33237121
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattatcactcttttat 408  Q
    ||||||||| ||||||||| ||||||| |||||||||||| | ||||||||||    
T  33237173 tccttaatgaccaatttatattcatatgaatgtcaagattgtaactcttttat 33237121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 33998902 - 33998854
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    |||||||||||||||||||||||||||||| | ||| |||| |||||||    
T  33998902 aattttgattttagtccctaaaaaataaaatgagatatttttatcctca 33998854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 39187544 - 39187587
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattat 397  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||    
T  39187544 ggtccttaatgaccaatttatgttcatataaatgtcaaaattat 39187587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 26241570 - 26241524
Alignment:
Q  283 ttttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||||    
T  26241570 tttttattttaatccctaaaaaataaaatgagatgttttcatcctca 26241524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 33005223 - 33005135
Alignment:
Q  242 agggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaa-taaaacgggatgttttcatcctcaca 331  Q
    ||||||||| |||||||| |||||||| |||||||  | ||||||| |||| |||||||||||| ||||| | || |||||||||||||||    
T  33005223 agggttaaataagttttt-cgtccctataaatatat-taaattttgcttttcgtccctaaaaaaataaaatgagaagttttcatcctcaca 33005135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 2195364 - 2195426
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttt 320  Q
    |||||||||| |||||||||| || |||| |||||||| |||| ||||||||||| |||||||||    
T  2195364 tttttcgtccttaaaaatata-gtaaattatgattttattccc-aaaaaataaaatgggatgttt 2195426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 33004952 - 33005012
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||||||||| ||||| ||||| | |||||||| ||| | ||| ||||||||||||    
T  33004952 ggtccttaatggccactttattttcatgtgaatgtcaaaattgtaactattttatgttcaa 33005012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 9087 - 9142
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9087 caatttatgttcatattaatgtcaagattatcactcttttatgttcaagatgtatc 9142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 30641729 - 30641784
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30641729 caatttatgttcatattaatgtcaagattatcactcttttatgttcaagatgtatc 30641784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 36599832 - 36599907
Alignment:
Q  257 ttttcgtccctaaaaatata-agtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||| |||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||||| |||||||    
T  36599832 ttttcatccctaaaaatatatagtgaattttgatttcagtctcttaaaaataaaacgggatgttttcaccctcaca 36599907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 26032259 - 26032333
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||| ||||||| | |||||||||||||| |||||||||||| |||| | |||||||||||||||||    
T  26032259 tttttcgtccctataaatata-gcgaattttgattttaatccctaaaaaattaaactgaatgttttcatcctcaca 26032333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 36060830 - 36060759
Alignment:
Q  238 taatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaac 311  Q
    ||||||||||||| |||||||| |||  ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  36060830 taatagggttaaataagttttt-cgtttctaaaaatata-gtgaattttgattttagtccctaaaaaattaaac 36060759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 40972209 - 40972122
Alignment:
Q  242 agggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||| || ||||||| |||||| ||||||||  |||||||||||||||||||||||||||||||  | ||||||| |||||||||    
T  40972209 agggttaaataa-ttttttcatccctataaatataac-gaattttgattttagtccctaaaaaataaaatagaatgtttttatcctcaca 40972122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 38445948 - 38445888
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||||||||| ||||||||||| | |||||||||||||| | ||||||||||||||    
T  38445948 ggtccttaatggccactttatgttcatgtgaatgtcaagattataaatcttttatgttcaa 38445888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 40971851 - 40971922
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctc 328  Q
    |||||| ||| || |||||||| | |||||||||||||||||||||||||||||| | |||||||||||||||    
T  40971851 tttttcatccttataaatataa-taaattttgattttagtccctaaaaaataaaatgagatgttttcatcctc 40971922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 7630670 - 7630624
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  7630670 aattttgattttagtccctaaaaaataaaaagagatgttttcatcct 7630624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 756972 - 756924
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||||    
T  756972 aattttgattttagtctctaaaaaataaaacgcaatgttttcatcctca 756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 15304445 - 15304505
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||||||||| ||||||||||| | ||| |||||||||| |||||| |||||||||    
T  15304445 ggtccttaatggccactttatgttcatgtgaatatcaagattataactcttatatgttcaa 15304505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 331
Target Start/End: Complemental strand, 38446055 - 38445969
Alignment:
Q  243 gggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||| |||||||| | |||||| ||||| | | ||||||||||||||||||||||||||| |||| | ||||||||| |||||||    
T  38446055 gggttaaataagttttt-catccctataaataca-gcgaattttgattttagtccctaaaaaattaaactgaatgttttcaacctcaca 38445969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 30856446 - 30856376
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    ||||||||||||||||||||||  |||||||| ||||  |||||||||||| |||  |||||||||||||||    
T  30856446 tttttcgtccctaaaaatataac-gaattttggttttgttccctaaaaaatgaaataggatgttttcatcct 30856376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 38142541 - 38142486
Alignment:
Q  360 taatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    ||||||||| ||||| |||||||||||||||| ||||| ||| |||||||||||||    
T  38142541 taatggccattttattttcatattaatgtcaatattataacttttttatgttcaag 38142486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 21034873 - 21034823
Alignment:
Q  361 aatggccaatttatgttcatattaatgtcaagattatcactcttttatgtt 411  Q
    |||||||| ||||||||||| | |||||||||||||| |||||||||||||    
T  21034873 aatggccactttatgttcatgtgaatgtcaagattataactcttttatgtt 21034823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 18258135 - 18258048
Alignment:
Q  240 atagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    ||||||||||| |||||||| | |||| ||||||||  ||||  ||| ||||||||||||||||||| |||| | |||||||||||||||    
T  18258135 atagggttaaataagtttttcc-tccccaaaaatatg-gtgatcttttattttagtccctaaaaaattaaactgaatgttttcatcctca 18258048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 26032354 - 26032411
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgtt 411  Q
    ||||||| ||| ||| ||||||||||| | |||||||||||||| |||||||||||||    
T  26032354 ggtccttgatgaccactttatgttcatgtgaatgtcaagattataactcttttatgtt 26032411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 36060718 - 36060661
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgtt 411  Q
    ||||| ||||||||||||||| || |||| |||||||||||||| | |||||||||||    
T  36060718 ggtccctaatggccaatttatattaatatgaatgtcaagattataaatcttttatgtt 36060661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 17436472 - 17436524
Alignment:
Q  279 tgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||||| || |||||||||||||| | ||||||||||| |||||    
T  17436472 tgaattttgattttaatctctaaaaaataaaactgaatgttttcatcttcaca 17436524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 32892368 - 32892308
Alignment:
Q  366 ccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatctatg 426  Q
    ||||||||||||||||  ||||||  |||||| ||||||||||| ||||| ||||||||||    
T  32892368 ccaatttatgttcataaaaatgtccggattataactcttttatgatcaagatgtatctatg 32892308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 12542110 - 12542170
Alignment:
Q  245 gttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaata 307  Q
    |||||| ||||||||| ||| ||| |||||||| ||||||||||||||| |||||||||||||    
T  12542110 gttaaataagtttttt-gtctctataaatataa-tgaattttgattttaatccctaaaaaata 12542170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 21034658 - 21034708
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||| ||||||| ||||||||||| | |||||||||| |||||||    
T  21034658 aattttgattatagtccccaaaaaataaaatgagatgttttcaccctcaca 21034708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 17436694 - 17436638
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgtt 411  Q
    |||| ||||| | |||||||||| ||||| ||||||||||||| ||| |||||||||    
T  17436694 gtccataatgactaatttatgtttatattgatgtcaagattataacttttttatgtt 17436638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 18258026 - 18257966
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||| || |||| ||||||||||| | |||||||||||||| ||  ||||||||||||    
T  18258026 ggtccttgatagccattttatgttcatgtgaatgtcaagattataaccattttatgttcaa 18257966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 41863575 - 41863619
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgtt 411  Q
    |||||| ||||||||| |||||||| ||||| |||||||||||||    
T  41863575 caatttttgttcatatgaatgtcaaaattattactcttttatgtt 41863619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 41909039 - 41908991
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    |||||||||||||| ||||| |||||||||| ||  |||||||||||||    
T  41909039 caatttatgttcatgttaatatcaagattatgacaattttatgttcaag 41908991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 48798541 - 48798596
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48798541 caatttatgttcatattaatgtcaagattatcactcttttatgttcaagatgtatc 48798596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 41609297 - 41609229
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  41609297 ggtccttaatggctaatttatgttcatataaatgtcaagattataactcttttatgatcaagatgtatc 41609229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 24789662 - 24789739
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacataa 334  Q
    |||||||||| |||||||||||  ||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  24789662 tttttcgtccttaaaaatataac-gaaatttgattttagtccttaaaaaataaaacggggtgttttcatcctcatataa 24789739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 24818597 - 24818520
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacataa 334  Q
    |||||||||| |||||||||||  ||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  24818597 tttttcgtccttaaaaatataac-gaaatttgattttagtccttaaaaaataaaacggggtgttttcatcctcatataa 24818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 17947339 - 17947289
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  17947339 aattttgattttagtccctaaaaaataaaatgagatgttttcatcctcaca 17947289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 24789755 - 24789814
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  24789755 gtccttaatgaccaatttatgttcatattaatatcaa-attatcactcttttttgttcaag 24789814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 24818504 - 24818445
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  24818504 gtccttaatgaccaatttatgttcatattaatatcaa-attatcactcttttttgttcaag 24818445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 51203232 - 51203306
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||| ||||||  | |||||||||||||||||||||||||||||||  | ||| |||||||||||||    
T  51203232 tttttcgtccctataaatatt-gcgaattttgattttagtccctaaaaaataaaatagaatgctttcatcctcaca 51203306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 5521478 - 5521412
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||||  ||||||||||||||| |||| ||||||||| ||||||||||| ||||| ||||||    
T  5521478 tccttaatggttaatttatgttcatataaatgccaagattataactcttttatggtcaagatgtatc 5521412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 31792836 - 31792776
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||||| ||| |||||||| || | |||||||||||||| ||||||||||||||||    
T  31792836 ggtccttaatgaccagtttatgtttatgtgaatgtcaagattataactcttttatgttcaa 31792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 11692162 - 11692236
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||| |||||| ||||||| | ||||||||||||||||| ||||||||| ||||   |||||||||||||||||    
T  11692162 tttttcatccctataaatata-gcgaattttgattttagtctctaaaaaattaaacttaatgttttcatcctcaca 11692236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 331
Target Start/End: Original strand, 52131904 - 52131993
Alignment:
Q  240 atagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||| ||||| |  |||||||| ||||||||  |||||||||||||||||| |||||||| |||  | |||||||||||||||||    
T  52131904 atagggttaaataagttatc-cgtccctacaaatataac-gaattttgattttagtccataaaaaattaaaatgaatgttttcatcctcaca 52131993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 5521580 - 5521527
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaa 310  Q
    ||||||||||||| ||||||| | |||||||||||||||||| ||||||||||||    
T  5521580 tttttcgtccctataaatata-gcgaattttgattttagtccttaaaaaataaaa 5521527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 33414346 - 33414292
Alignment:
Q  280 gaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacataa 334  Q
    |||||||||||||| ||||||||||||||||| |  ||||||||||||| |||||    
T  33414346 gaattttgattttaatccctaaaaaataaaactgattgttttcatcctcgcataa 33414292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 41823794 - 41823728
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||| |||| |||||||||||| ||| |||||||||| || |||||||| ||||| ||||||    
T  41823794 tccttaatgaccaagttatgttcatatgaatctcaagattataacacttttatgatcaagatgtatc 41823728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 2478946 - 2479010
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgtttt 321  Q
    ||||||||||||| |||||||  | |||||||||||||||||||||||| ||||| | ||||||||    
T  2478946 tttttcgtccctataaatatattt-aattttgattttagtccctaaaaattaaaatgagatgtttt 2479010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 7504909 - 7504873
Alignment:
Q  358 cttaatggccaatttatgttcatattaatgtcaagat 394  Q
    |||||||| ||||||||||||||||||||||||||||    
T  7504909 cttaatggtcaatttatgttcatattaatgtcaagat 7504873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 33413860 - 33413912
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacata 333  Q
    ||||||||| |||||||||||||||||||| | ||||||||| | ||||||||    
T  33413860 aattttgatattagtccctaaaaaataaaatgagatgttttccttctcacata 33413912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 44341010 - 44340962
Alignment:
Q  280 gaattttgattttagtccctaaaaaataaaacgggatgttttcatcctc 328  Q
    ||||| ||||||||||||||||||||||||| ||| |||||| ||||||    
T  44341010 gaattctgattttagtccctaaaaaataaaaagggttgttttaatcctc 44340962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 31792635 - 31792709
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||| |||||||    |||||||||||||||  ||||||||||||| |  |||||||||||||||||    
T  31792635 tttttcgtccctataaatatatca-aattttgattttagtttctaaaaaataaaatgaaatgttttcatcctcaca 31792709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 36620950 - 36620993
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcat 324  Q
    ||||||||||||||| |||||||||||||| | |||||||||||    
T  36620950 aattttgattttagttcctaaaaaataaaatgagatgttttcat 36620993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 38851985 - 38852038
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaa 310  Q
    ||||||||| |||||||||||| | ||||||||||||| ||| ||||||||||||    
T  38851985 tttttcgtctctaaaaatataa-taaattttgattttaatccttaaaaaataaaa 38852038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 51203326 - 51203376
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactctt 404  Q
    ||||||||||| |||||||||||| |||| |||||||| ||||| ||||||    
T  51203326 ggtccttaatgaccaatttatgtttatataaatgtcaaaattataactctt 51203376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 5521244 - 5521293
Alignment:
Q  280 gaattttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    |||||||||||| |||| ||||||||| ||| | ||||||||||||||||    
T  5521244 gaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 5521293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 52132012 - 52132081
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatct 423  Q
    |||||||||| | || ||||||||||| | |||||||| ||||| ||| ||||||||||||  |||||||    
T  52132012 ggtccttaatagtcactttatgttcatgtgaatgtcaaaattataacttttttatgttcaaattgtatct 52132081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 4120111 - 4120051
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||| |||||||||| ||||||||||| | |||||||||||||| ||| ||  ||||||||    
T  4120111 ggtctttaatggccactttatgttcatgtaaatgtcaagattataacttttccatgttcaa 4120051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 6732901 - 6732854
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaa 304  Q
    |||||||| |||||||||||||  ||||||||||||||| |||||||||    
T  6732901 tttttcgtacctaaaaatataaa-gaattttgattttagaccctaaaaa 6732854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 44340791 - 44340839
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    |||||||| |||||| ||||||||| ||||| ||| |||||||||||||    
T  44340791 caatttatcttcataataatgtcaacattataacttttttatgttcaag 44340839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 3014381 - 3014449
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||| ||||| ||||||    
T  3014381 ggtccttaatggccaatttatattcatataaatatcaagattataactcttttatggtcaagatgtatc 3014449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 3014630 - 3014545
Alignment:
Q  245 gttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||| |||||||||| |||||| ||||||| ||||||||| |||||| | |||||||||||||| | |||||||| |||||||||    
T  3014630 gttaaataagttttttcatccctataaatata-gtgaatttttattttaattcctaaaaaataaaatgtgatgtttttatcctcaca 3014545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 353513 - 353463
Alignment:
Q  366 ccaatttatgttcatattaatgtcaagattatcactcttttatgttcaagg 416  Q
    |||||||||||| ||||||||||||| ||||| |||||||||| |||||||    
T  353513 ccaatttatgtttatattaatgtcaatattatgactcttttatattcaagg 353463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 1428938 - 1428884
Alignment:
Q  360 taatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||| |||||||||||| |||| |||||||||||||| | ||||||||||||||    
T  1428938 taatgaccaatttatgttaatatgaatgtcaagattatgagtcttttatgttcaa 1428884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 4096844 - 4096770
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||| ||||| ||   ||||||||||||| |||||||||||| ||| | |||||||||||| |||||    
T  4096844 tttttcgtccctataaata-aatcaaattttgattttaatccctaaaaaattaaatgagatgttttcatcatcaca 4096770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 34707662 - 34707721
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||||||||||||| ||| || ||||||| |||||||| ||||| | ||||||||||||||    
T  34707662 ggtccttaatggcccatt-atattcatatgaatgtcaaaattataattcttttatgttcaa 34707721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 24895709 - 24895646
Alignment:
Q  359 ttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatc 422  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  24895709 ttaatggccaatttatattcatataaatgtcaagattataactcttttatgatcaagatgtatc 24895646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 331
Target Start/End: Original strand, 35665323 - 35665412
Alignment:
Q  240 atagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||| |||||||| ||||| || ||||||| | ||||||||||||||||||||||||||| |||  | |||||||||||||||||    
T  35665323 atagggttaaataagttttt-cgtccttataaatata-gcgaattttgattttagtccctaaaaaattaaagtgaatgttttcatcctcaca 35665412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 30956143 - 30956208
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtat 421  Q
    |||||||| ||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||    
T  30956143 tccttaattgccaatttaggttcatataaatgtcaagattataactcttttatggtcaagatgtat 30956208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 37866543 - 37866483
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||| ||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  37866543 ggtccctaatggtaaatttatgttcatattaatgttaagattatcgctcttttatgttcaa 37866483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 578518 - 578464
Alignment:
Q  277 agtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||||||||||||||||||||||||  | ||||| |||||||||||    
T  578518 agtgaattttgattttagtccctaaaaaataaaatagaatgttgtcatcctcaca 578464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 7693578 - 7693651
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcac 330  Q
    |||||||| |||| ||||||| | ||||||||||||||||||| ||||||| |||| | ||||||||||||||||    
T  7693578 tttttcgttcctataaatata-gagaattttgattttagtcccaaaaaaattaaactgaatgttttcatcctcac 7693651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 7876157 - 7876245
Alignment:
Q  241 tagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||| ||||||||   |||||| |||||||| ||||||||||||| | |||||||||||| |||| | |||||||||||||||||    
T  7876157 tagggttaaataagtttttat-tccctataaatataa-tgaattttgatttaaatccctaaaaaattaaactgaatgttttcatcctcaca 7876245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 578246 - 578291
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcc 326  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  578246 aattttgattttagtccctaaaaaataaaatgagatgttttcatcc 578291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 17642676 - 17642612
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgtttt 321  Q
    ||||||||||||||||||||| | |||||||||||||||||| |||||||| |||| | |||||||    
T  17642676 tttttcgtccctaaaaatata-gcgaattttgattttagtccttaaaaaattaaactgaatgtttt 17642612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 42479981 - 42480038
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttca 413  Q
    |||||||||  ||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  42479981 tccttaatgaacaatttatgttcatattaatgtcaacattataactattttatgttca 42480038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 37149282 - 37149341
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||    
T  37149282 ggtccttaatgaccaatttattttcatgttaatgtcaagattgtcact-ttttatgttcaa 37149341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 578452 - 578397
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatg 409  Q
    |||| |||||| ||||||||||||||||| ||| |||||||||| |||||||||||    
T  578452 ggtcgttaatgaccaatttatgttcatatgaatatcaagattataactcttttatg 578397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 1944151 - 1944092
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||| |||||||||||||||||| |||| |||||||| ||||| | ||||||||||||||    
T  1944151 gtccctaatggccaatttatgttaatatgaatgtcaaaattatgagtcttttatgttcaa 1944092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 12496930 - 12496857
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||| |||||| ||||||||  |||||||||||||||| |||||||||| ||||  ||||||||||||||||||    
T  12496930 tttttcatccctataaatataac-gaattttgattttagttcctaaaaaatcaaac-cgatgttttcatcctcaca 12496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 28191451 - 28191525
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||| ||||||| ||||||| | |||||||||||||||||| || ||||| |||| | |||||||||||||||||    
T  28191451 ttttttgtccctataaatata-gcgaattttgattttagtccgtacaaaattaaactgaatgttttcatcctcaca 28191525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 35665635 - 35665588
Alignment:
Q  284 tttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  35665635 tttgattttagtccctaaaaactaaaatgagatgttttcatcctcaca 35665588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 12496839 - 12496781
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||||||||| || ||||||||||| | |||||||||||||| || |||||||||||||    
T  12496839 tccttaatgggcactttatgttcatgtgaatgtcaagattataacacttttatgttcaa 12496781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 7895436 - 7895387
Alignment:
Q  366 ccaatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    |||||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  7895436 ccaatttatgtttatattaatgtcaaaattttgactcttttatgttcaag 7895387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 11764017 - 11763960
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgtt 411  Q
    ||||| ||||| || ||||||||| ||||||||||||||| |||||||||||| ||||    
T  11764017 ggtccctaatgaccgatttatgttgatattaatgtcaagactatcactcttttttgtt 11763960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 25954800 - 25954751
Alignment:
Q  282 attttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||||  ||||||||||||| | ||||||||||||||||||    
T  25954800 attttgattttagtttctaaaaaataaaatgagatgttttcatcctcaca 25954751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 11763738 - 11763817
Alignment:
Q  245 gttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatc 325  Q
    |||||| ||||||||||||| |||||||||| ||  ||||||||||||| ||   || |||||||||| ||||||||||||    
T  11763738 gttaaataagttttttcgtctctaaaaatat-agcaaattttgattttaatcaaaaataaataaaacgagatgttttcatc 11763817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 12926540 - 12926592
Alignment:
Q  279 tgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||||||| |||||| |||||||||| | | ||||||||||||||||    
T  12926540 tgaattttgattttcgtccctgaaaaataaaatgagttgttttcatcctcaca 12926592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 1944224 - 1944173
Alignment:
Q  280 gaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||||||| ||||||||| ||||  ||| ||||||||||||||    
T  1944224 gaattttgattttagtctctaaaaaattaaacatgatattttcatcctcaca 1944173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 7876267 - 7876326
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||| |||| ||| |||||||| |||| |||||||| ||||| ||||||||||||||||    
T  7876267 gtcctaaatgaccactttatgttaatataaatgtcaatattataactcttttatgttcaa 7876326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 37149211 - 37149258
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctc 328  Q
    ||||||||||||| || |||||||||||||| |||||| |||||||||    
T  37149211 aattttgattttaatctctaaaaaataaaacaggatgtgttcatcctc 37149258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 24895822 - 24895742
Alignment:
Q  242 agggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcat 324  Q
    ||||||||| |||||||| ||||| || ||||||||   |||||||||||||||||||| |||||||||  | ||||||||||    
T  24895822 agggttaaataagttttt-cgtccttacaaatataaca-aattttgattttagtccctacaaaataaaattgaatgttttcat 24895742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 7876532 - 7876469
Alignment:
Q  239 aatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaa 304  Q
    |||||||||||| || ||||| ||||| || |||||||| ||||||||||||||| ||||||||||    
T  7876532 aatagggttaaataaattttt-cgtccttataaatataa-tgaattttgattttaatccctaaaaa 7876469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 34196802 - 34196761
Alignment:
Q  356 tccttaatggccaatttatgttcatattaatgtcaagattat 397  Q
    ||||||||| |||||||||||| |||| ||||||||||||||    
T  34196802 tccttaatgaccaatttatgtttatataaatgtcaagattat 34196761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 43281559 - 43281649
Alignment:
Q  238 taatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||| |||||||| |||||||| |||||||| ||||||| ||| ||||||| || | ||| |||||||||||||   |||||||||||||||||    
T  43281559 taattgggttaaataagttttt-cgtccctacaaatata-gtggattttgacttcaatcc-taaaaaataaaacataatgttttcatcctcaca 43281649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 43281670 - 43281731
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaag 415  Q
    ||||| ||||| |||||||||||| | | ||||||||||||| | ||| |||||||||||||    
T  43281670 ggtccctaatgaccaatttatgtttaaaataatgtcaagattgtgactattttatgttcaag 43281731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 10439507 - 10439591
Alignment:
Q  241 tagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctc 328  Q
    |||||||||| ||||||||  | ||||||||||||||  |||||||  ||||||||| |||| | ||||||  |||||||||||||||    
T  10439507 tagggttaaataagttttt--ggccctaaaaatataac-gaattttatttttagtccataaagagtaaaacatgatgttttcatcctc 10439591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 27002758 - 27002817
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||||||||||||| ||| || ||||||| |||||||| ||||| | ||||||||||||||    
T  27002758 ggtccttaatggcccatt-atattcatatgaatgtcaaaattataattcttttatgttcaa 27002817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 426
Target Start/End: Complemental strand, 22210202 - 22210143
Alignment:
Q  367 caatttatgttcatattaatgtcaagattatcactcttttatgttcaaggtgtatctatg 426  Q
    |||||||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||    
T  22210202 caatttatgttcatatgaatgtcaagattataacacttttatgatcaagatgtatctatg 22210143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 23757558 - 23757484
Alignment:
Q  354 ggtccttaatggccaatttatgttca--tattaatgtcaagattatcactcttttatgttcaaggtgtatctatg 426  Q
    ||||||||||||||| |||||||| |  ||| |||||||| ||||| ||||||||||||||||| ||||||||||    
T  23757558 ggtccttaatggccattttatgtttagatataaatgtcaaaattataactcttttatgttcaagatgtatctatg 23757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 33758097 - 33758038
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||||||||||||| ||||||||||| | |||||||||||||| ||||| |||| |||||    
T  33758097 gtccttaatggccactttatgttcatgtgaatgtcaagattataactctattatattcaa 33758038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 15249635 - 15249585
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||||| ||| ||||||||||||| | ||||||||||||||||||    
T  15249635 aattttgattttcgtcactaaaaaataaaatgagatgttttcatcctcaca 15249585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 23757322 - 23757372
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||| |||||| |||||||||||||||| | ||||||||||||||||||    
T  23757322 aattttaattttaatccctaaaaaataaaatgagatgttttcatcctcaca 23757372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 23757666 - 23757586
Alignment:
Q  243 gggttaaagaagttttttcgtcccta-aaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcat 324  Q
    |||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| |||||||| |||| | ||||| ||||    
T  23757666 gggttaaataagttttt-cgtccctataaaatata-gtgaattttgattttagtccgtaaaaaattaaacagaatgttgtcat 23757586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 36128635 - 36128683
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    ||||||||||||  ||| |||||||||||||| ||||||||||||||||    
T  36128635 aattttgattttgatccttaaaaaataaaacgagatgttttcatcctca 36128683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 13515457 - 13515516
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||| |||| ||||||||||||| ||||||||| |||| ||||| |||| |||||    
T  13515457 gtccttaatagccactttatgttcatatgaatgtcaagtttataactctattatattcaa 13515516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 13604990 - 13605049
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||| |||| ||||||||||||| ||||||||| |||| ||||| |||| |||||    
T  13604990 gtccttaatagccactttatgttcatatgaatgtcaagtttataactctattatattcaa 13605049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 158739 - 158789
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||| |||| ||||||||||||||||| | ||||||||||||| ||||    
T  158739 aattttggttttggtccctaaaaaataaaatgagatgttttcatccacaca 158789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 22209994 - 22210044
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||||||||||| || ||||||| |||||| | ||||||||||||||||||    
T  22209994 aattttgatttttgttcctaaaagataaaatgagatgttttcatcctcaca 22210044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 33657645 - 33657592
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaa 310  Q
    |||||||||| |||||||||| | |||||||||||||||| |||||||| |||||    
T  33657645 tttttcgtccttaaaaatata-gcgaattttgattttagttcctaaaaagtaaaa 33657592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 1691616 - 1691546
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    ||||||||||||| ||||||| | ||||||||||||||||| ||||||||| |||| | |||||||||||||    
T  1691616 tttttcgtccctataaatata-gcgaattttgattttagtctctaaaaaattaaactgaatgttttcatcct 1691546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 331
Target Start/End: Original strand, 14397986 - 14398075
Alignment:
Q  240 atagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||| |||||||| | ||| || |||||||| | ||||||||||||||| |||||||||| |||| | |||||||||||||||||    
T  14397986 atagggttaaataagttttt-catccatataaatataact-aattttgattttagttcctaaaaaattaaactgaatgttttcatcctcaca 14398075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 10840535 - 10840486
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  10840535 aattttgattttagtccttaaaaa-taaaacgggatgttttcatcctcaca 10840486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 33261725 - 33261771
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  33261725 aattttgattttagtccctaaaaaataaaatgagatgttttcatcct 33261771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 33281884 - 33281930
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  33281884 aattttgattttagtccctaaaaaataaaatgagatgttttcatcct 33281930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 10840344 - 10840389
Alignment:
Q  366 ccaatttatgttcatattaatgtcaagattatcactcttttatgtt 411  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  10840344 ccaatttatgttcatattaatgtcaagattatgattcttttatgtt 10840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 33262065 - 33261979
Alignment:
Q  239 aatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    |||||||| ||| |||||||| ||| |||| |||||||  | |||||||||||||||||||||||||| |||| | |||||||||||||    
T  33262065 aatagggtcaaataagttttt-cgttcctataaatatagct-aattttgattttagtccctaaaaaattaaactgaatgttttcatcct 33261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 33282224 - 33282138
Alignment:
Q  239 aatagggttaaagaagttttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcct 327  Q
    |||||||| ||| |||||||| ||| |||| |||||||  | |||||||||||||||||||||||||| |||| | |||||||||||||    
T  33282224 aatagggtcaaataagttttt-cgttcctataaatatagct-aattttgattttagtccctaaaaaattaaactgaatgttttcatcct 33282138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 14398096 - 14398155
Alignment:
Q  355 gtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    |||||||||  ||| ||||||||||||| |||||| ||||||| | ||||||||||||||    
T  14398096 gtccttaataaccactttatgttcatatgaatgtcgagattataattcttttatgttcaa 14398155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 7435394 - 7435462
Alignment:
Q  256 tttttcgtccctaaaaatataagtgaattttgattttagtccctaaaaaataaaacgggatgttttcatcc 326  Q
    ||||| |||| |||||||||| |||||||| || |||| ||||||||||||||||||  ||||||||||||    
T  7435394 ttttttgtccttaaaaatata-gtgaattt-gactttaatccctaaaaaataaaacgatatgttttcatcc 7435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 27086301 - 27086251
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 331  Q
    |||| |||||||||||| |||||||| |||| | |||||||||||||||||    
T  27086301 aattctgattttagtccttaaaaaattaaactgaatgttttcatcctcaca 27086251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 14398328 - 14398280
Alignment:
Q  281 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctca 329  Q
    |||||||||||||||  |||| |||||||| | ||||||||||||||||    
T  14398328 aattttgattttagtttctaacaaataaaatgagatgttttcatcctca 14398280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 27085997 - 27086041
Alignment:
Q  288 attttagtccctaaaaaat-aaaacgggatgttttcatcctcaca 331  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||    
T  27085997 attttagtccctaaaaaataaaaatgagatgttttcatcctcaca 27086041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 33261957 - 33261897
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||||| ||| ||||||||||| | ||||| || ||||| ||| ||||||||||||    
T  33261957 ggtccttaatgaccactttatgttcatgtgaatgtaaaaattataacttttttatgttcaa 33261897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 33282116 - 33282056
Alignment:
Q  354 ggtccttaatggccaatttatgttcatattaatgtcaagattatcactcttttatgttcaa 414  Q
    ||||||||||| ||| ||||||||||| | ||||| || ||||| ||| ||||||||||||    
T  33282116 ggtccttaatgaccactttatgttcatgtgaatgtaaaaattataacttttttatgttcaa 33282056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University