View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7860_high_1 (Length: 472)
Name: NF7860_high_1
Description: NF7860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7860_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Complemental strand, 37508175 - 37507751
Alignment:
| Q |
30 |
tggtgttcacattctctatcctaaaaacctccgagtctttgctcacttactggcttgagtgtaaagtgcttgcaggtattcccaacttgccatcaacatt |
129 |
Q |
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| T |
37508175 |
tggtgttcacattctctatcctaaaaacctcccagtctttgctcacttactggcttgagagtaaagtgcttgcaggtattcccaacttgccatcaacatt |
37508076 |
T |
|
| Q |
130 |
gttgttcctcgtcggacgttgctcttgtgatcaaaacatatcagtgaaatcgtacgtgggaaactagttttccccgtctcttccctcaaaagattaatac |
229 |
Q |
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| T |
37508075 |
gttgttcctcgtcggacgttgttcttgtgatcaaaacatatcagtgaaatcgtacgtgggaaactagttttccccgtctcttccctcaaaagattaatac |
37507976 |
T |
|
| Q |
230 |
ttctcttgataaaataatattttactttgtctcttttttattgtggatgtttaaattttatttagtgagtaacaagagtgcaatagaccaactaatctgt |
329 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37507975 |
ttctcttaataaaataatattttactttgtctcttttttattgtggatgtttaaattttatttagtgagtaacaagagtgcaatagaccaactaatctgt |
37507876 |
T |
|
| Q |
330 |
ggcatgtttggatgaaacacttttaagaaaaatacaaacaatgcactctaaaaaacttgtgtgctctaaaatttttgcgggactcacataatgatttatg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
37507875 |
ggcatgtttggatgaaacacttttaagaaaaatacaaacaatgcactctaaaaaacttgtgcgctctaaaatttttgtgggactcacataatgatttatc |
37507776 |
T |
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| Q |
430 |
aacacatagttgacttactttctct |
454 |
Q |
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| T |
37507775 |
aacacatagttgacttactttctct |
37507751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 37848265 - 37848377
Alignment:
| Q |
234 |
cttgataaaataatattttactttgtctc-ttttttattgtggatgtttaaattttatttagtgagtaacaagagtgcaatagaccaactaatctgtggc |
332 |
Q |
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||||||||||||||||||||||||||||| ||||||| || ||| | ||||||||||| |||||| |||||||| ||| | || ||||||||| ||||| |
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| T |
37848265 |
cttgataaaataatattttactttgtctctttttttactggggaaggttaaattttatgtagtgaataacaagaatgccaaaggccaactaatttgtggt |
37848364 |
T |
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| Q |
333 |
atgtttggatgaa |
345 |
Q |
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|| ||||||||| |
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| T |
37848365 |
ataattggatgaa |
37848377 |
T |
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