View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7860_high_2 (Length: 392)
Name: NF7860_high_2
Description: NF7860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7860_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 53819068 - 53819432
Alignment:
| Q |
14 |
atattcgtattagcttaagaaatcatgtgcactaattatttatgagttagttgtaatgttaggcctaacatgctaaaccttcccaatatccttaatggat |
113 |
Q |
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| T |
53819068 |
atattcgtattagcttaagaaatcatgtgcactaattatttatgagttagttgtaatgttaggcctaacatgctaaaccttcccactatccttaatggat |
53819167 |
T |
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| Q |
114 |
tagcagatcaggtaccggcaaatgaaactgtaattagttgtcatccacgattcatgtcctctttcaatttaagaaacacaaacatgccatgtgcaataat |
213 |
Q |
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| T |
53819168 |
tagcagatcaggtaccggcaaatgaaactgtaattagttgtcatccacgattcatgtcctctttcaatttaagaaacacaaacatgccatgtgcaataat |
53819267 |
T |
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| Q |
214 |
aattcttcctcccacaatcatgcaatactcaaattttcctctattatttgctttttctctattttattcttctggtattaattttcctaaataatgagtg |
313 |
Q |
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| T |
53819268 |
agttcttcctcccacaatcatgcaatactcaaattttcctctattatttgctttttctctattttattcttctggtattaattttcctaaataatgagtg |
53819367 |
T |
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| Q |
314 |
tatcattatagttcatcgtaggtttaaaataagcaatgtatatttgttctataacaagaaatttg |
378 |
Q |
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| T |
53819368 |
tatcattatagttcatcgtaggtgtaatataagcaatgtatatttgttctataacaagaaatttg |
53819432 |
T |
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