View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7860_high_6 (Length: 234)

Name: NF7860_high_6
Description: NF7860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7860_high_6
NF7860_high_6
[»] chr3 (12 HSPs)
chr3 (1-98)||(10378010-10378107)
chr3 (151-229)||(10378160-10378238)
chr3 (1-98)||(10134041-10134138)
chr3 (1-98)||(10365538-10365635)
chr3 (1-93)||(10075126-10075218)
chr3 (8-94)||(10102219-10102305)
chr3 (8-94)||(10213142-10213228)
chr3 (1-98)||(10136676-10136773)
chr3 (3-98)||(10221242-10221337)
chr3 (174-229)||(10136506-10136561)
chr3 (174-229)||(10365736-10365791)
chr3 (174-214)||(10133900-10133940)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-98)||(85754-85851)
[»] chr5 (1 HSPs)
chr5 (3-98)||(26816600-26816695)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10378010 - 10378107
Alignment:
Q  1 cagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378010 cagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 10378107  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 10378160 - 10378238
Alignment:
Q  151 ttattttcatgttctttgtttagataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378160 ttattttcatgttctttgtttagataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatct 10378238  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 10134138 - 10134041
Alignment:
Q  1 cagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 98  Q
    |||||||||||||||||||||||| | || ||||||||||||||| |||| | |||||||||||| ||| ||||||||| ||||||||||||||||||    
T  10134138 cagcaagataaacatctgcagcaacaagactcatttattttattgtcataaagaaggctaaatgtcagtcaaaactaaatcttatcagaaatttggac 10134041  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10365538 - 10365635
Alignment:
Q  1 cagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 98  Q
    |||||||||||||||||||||| | | |||||||||| ||| ||| |||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  10365538 cagcaagataaacatctgcagctacaagattcatttaattttttgtcatagagaaggctaaatgtcagtaaaaactaaatcttatcagaaatttggac 10365635  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 10075218 - 10075126
Alignment:
Q  1 cagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatt 93  Q
    |||||||||||||||||||||||  | |||||||||||||||||| |||| | ||||||||||| |||||||||||||| |||||||||||||    
T  10075218 cagcaagataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgcaagtaaaaactaaatcttatcagaaatt 10075126  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 10102305 - 10102219
Alignment:
Q  8 ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt 94  Q
    ||||||||||||||||  | |||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||    
T  10102305 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt 10102219  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 10213228 - 10213142
Alignment:
Q  8 ataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaattt 94  Q
    ||||||||||||||||  | |||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||    
T  10213228 ataaacatctgcagcagcaagattcatttattttattgtcataaagaaggctaaatgtaagtaaaaactaaagcttatcagaaattt 10213142  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 10136773 - 10136676
Alignment:
Q  1 cagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 98  Q
    |||||||||||||||||||||||  | |||||||||||||||||| |||| | |||| | ||||||||||||||||||| | ||||||||||||||||    
T  10136773 cagcaagataaacatctgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaaatcatatcagaaatttggac 10136676  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 10221337 - 10221242
Alignment:
Q  3 gcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 98  Q
    ||||||||||||| |||||||  | | ||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||||||||||||||    
T  10221337 gcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatcagaaatttggac 10221242  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 10136561 - 10136506
Alignment:
Q  174 ataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatct 229  Q
    |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  10136561 ataatgatggagaataatattcttaccaattgcttcaaccaggcgtagaaccatct 10136506  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 10365736 - 10365791
Alignment:
Q  174 ataatgatggagaataatattcttcccaattgcttcaaccaagtgtagaaccatct 229  Q
    ||||||||||||||||||||| || |||| ||||||||||| | ||||||||||||    
T  10365736 ataatgatggagaataatatttttaccaactgcttcaaccaggcgtagaaccatct 10365791  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 10133940 - 10133900
Alignment:
Q  174 ataatgatggagaataatattcttcccaattgcttcaacca 214  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  10133940 ataatgatggagaataatattcttaccaattgcttcgacca 10133900  T

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Target: scaffold0045 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 85851 - 85754
Alignment:
Q  1 cagcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 98  Q
    ||||||||||||||| |||||||  | |||||||||||||||||| |||| | |||| | ||||||||||||||||||| ||||||||||||||||||    
T  85851 cagcaagataaacatttgcagcagcaagattcatttattttattgtcataaagaaggatgaatgtaagtaaaaactaaatcttatcagaaatttggac 85754  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 26816695 - 26816600
Alignment:
Q  3 gcaagataaacatctgcagcaataggattcatttattttattgacatagataaggctaaatgtaagtaaaaactaaaccttatcagaaatttggac 98  Q
    ||||||||||||| |||||||  | | ||||||||||||| || |||| | || ||||||||||||||||||||||| ||||||||||||||||||    
T  26816695 gcaagataaacatatgcagcagcaagtttcatttattttactgtcataaagaaagctaaatgtaagtaaaaactaaatcttatcagaaatttggac 26816600  T

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