View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7860_low_1 (Length: 776)
Name: NF7860_low_1
Description: NF7860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7860_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 6737820 - 6738219
Alignment:
| Q |
18 |
gaaacaacctctttcgaagatgaagacaagttcatgagttgggtagcagaaatcagtgatgaagcttccaagtatgctgcgtgagcatatttacgatgcg |
117 |
Q |
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| T |
6737820 |
gaaacaacctctttcgaagatgaagacaagttcatgagttgggtagcagaaatcagtgatgaagcttccaaatatgctgcgtgagcttatttacgatgcg |
6737919 |
T |
|
| Q |
118 |
gacgtaagtaatatataaacttgcttgatttgaaattatataactccatctttattgcatttttaatactaaatgttttgattcatttgactattatgag |
217 |
Q |
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| T |
6737920 |
gacgtaagtaata----aacttgcttgatttgaaattatataactccatctttattgcatttttaatactaaatgttttgattcatttgactattatgag |
6738015 |
T |
|
| Q |
218 |
tttagcaaatttagtgttttcacttatgcacattttggagaattgttatacatataatcgtctcttgtttctctattatacaggaacagggtaaacagat |
317 |
Q |
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| T |
6738016 |
tttagcaaatttagtgttttcacttatgcacattttggagaattgttatacatataatcgtctcttgtttctctattatacaggaacagggtaaacagat |
6738115 |
T |
|
| Q |
318 |
aacaaatgtagttaaatgtgctactcttatgataagcaataaaagagcctcattccatatggagagcatacattctcgtgcacaagatgtgattgaacta |
417 |
Q |
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| T |
6738116 |
aacaaatgtagttaaatgtgctactcttatgataagcaagaaaagagcctcattccatatggagagcatacattctcgtgcccaagatgtgattcaacta |
6738215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 418 - 766
Target Start/End: Original strand, 6738319 - 6738666
Alignment:
| Q |
418 |
ttgaggacaaatgctacctataatatgtcaagggagtatttcgtactcttttttgataatttttactatgtgaatgaaattctggaaaatatgtagtaca |
517 |
Q |
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| T |
6738319 |
ttgaggacaaatgctgcctataatatgtcaagggagcatttcgtactcttttttgataatttttactatgtgaatgaaattctggaaaat-tgtagtaca |
6738417 |
T |
|
| Q |
518 |
aatagagtattgctcaagtgtggttggaccaataattatatgttgtttatatgtatatgcatgctagtggtgactaatgcctttgtcaccattgttttgg |
617 |
Q |
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| T |
6738418 |
aatagagtattgctcaagtgtggttggaccaataattatatgttgtttatatgtatatgcatgctagtggtgactaatgcctttgtcaccattgttttgg |
6738517 |
T |
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| Q |
618 |
ttggttggtttgaacgttcaagtgtggttagagtgcttgtttgcgtcatttacataccataaatttaaactgttatatctgaagttttcttccgcctttg |
717 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
6738518 |
ttggttggtttgaatgttcaagtgtggttaaagtgcttgtttgcgtcatttacataccataaatttaaactgttatgtctgaagttttcttctgcctttg |
6738617 |
T |
|
| Q |
718 |
tgcaaagactttgcgtagtttaaaaacctaaatttgttcattgatgtcc |
766 |
Q |
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| T |
6738618 |
tgcaaagactttgcgtagtttaaaaacctaaatttgttcatttatgtcc |
6738666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 266 - 421
Target Start/End: Complemental strand, 6541982 - 6541826
Alignment:
| Q |
266 |
tacatataatcgtctcttgtttctctattatacaggaacag-ggtaaacagataacaaatgtagttaaatgtgctactcttatgataagcaataaaagag |
364 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
6541982 |
tacatataattgtctcttgtttctctactatacaggaacagaggtgaacatataacacatgtagttaaatgtgctactcttattgtaagcaagaaaagag |
6541883 |
T |
|
| Q |
365 |
cctcattccatatggagagcatacattctcgtgcacaagatgtgattgaactattga |
421 |
Q |
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|||| |||||||| ||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
6541882 |
cctcgttccatatagagagcatacactctcgtgcccaagatgtgattcaactattga |
6541826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 6542849 - 6542735
Alignment:
| Q |
148 |
tgaaattatataactccatctttattgcatttttaatactaaatgttttgattcatttgactattatgagtttagcaaatttagtgttttcacttatgca |
247 |
Q |
| |
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|||||||| || ||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| | |
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| T |
6542849 |
tgaaattagattactaaatctttatggcatttttaatactaaatgttttgattcatgtgactattatgagtttagcaaa-ttagtattttcacttatgta |
6542751 |
T |
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| Q |
248 |
cattttggagaattgt |
263 |
Q |
| |
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||| |||||||||||| |
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| T |
6542750 |
catgttggagaattgt |
6542735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 6542958 - 6542867
Alignment:
| Q |
23 |
aacctctttcgaagatgaagacaagttcatgagttgggtagcagaaatcagtgatgaagcttccaagtatgctgcgtgagcatatttacgat |
114 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||| | |||||||| |
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| T |
6542958 |
aacctcttccgaagatgaagacaagttcatgagttgggtagcagaaatcagcaatgaagcttccaaatatgctgcattagcttttttacgat |
6542867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 6748163 - 6748414
Alignment:
| Q |
23 |
aacctctttcgaagatgaagacaagttcatgagttgggtagcagaaatcagtgatgaagcttccaagtatgctgcgtgagcatatttacgatgcggacgt |
122 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||| || | | |||||| || | | | | |
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| T |
6748163 |
aacctcttcggaagatgaagacaagttcatggcatgggtagcagcaatcagtaatgaagcttccatacatgatggatctgattatttaggagactggcat |
6748262 |
T |
|
| Q |
123 |
aagtaatatataaacttgcttgatttgaaattatataactccatctttattgcatttttaatactaaatgttttgattcatttgactattatgagtttag |
222 |
Q |
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||||||| |||||||||| |||||||||| || |||| ||||||| | |||||||||| | ||||||||||| |||||| ||| ||| |||||| |
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| T |
6748263 |
aagtaatg---aaacttgctttatttgaaattggattactctgtctttatggaatttttaataacacatgttttgatttatttgaatataatgcgtttag |
6748359 |
T |
|
| Q |
223 |
caaatttag--tgttttcacttatgcacattttggagaattgttatacatataat |
275 |
Q |
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| T |
6748360 |
caaatttacattattttcacgtacacaaatgttggagaattgttatacatataat |
6748414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 6503960 - 6503918
Alignment:
| Q |
379 |
gagagcatacattctcgtgcacaagatgtgattgaactattga |
421 |
Q |
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| T |
6503960 |
gagagcatacattctcgtgcacaagatgtgattcaactattga |
6503918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 6503014 - 6502954
Alignment:
| Q |
33 |
gaagatgaagacaagttcatgagttgggtagcagaaatcagtgatgaagcttccaagtatg |
93 |
Q |
| |
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| T |
6503014 |
gaagacgaagacaagttcatgacttgggtagcagcagtcactaatgaagcttccaaatatg |
6502954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 6593730 - 6593671
Alignment:
| Q |
242 |
tatgcacattttggagaattgttatacatataatcgtctcttgtttctctattatacagg |
301 |
Q |
| |
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||||||||| | |||||||| |||||||||||||||||| ||||| | ||||||||||| |
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| T |
6593730 |
tatgcacatgtaggagaattattatacatataatcgtcttttgttcatatattatacagg |
6593671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 6502709 - 6502667
Alignment:
| Q |
379 |
gagagcatacattctcgtgcacaagatgtgattgaactattga |
421 |
Q |
| |
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|||||||||||||||| ||| |||||||||||| ||||||||| |
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| T |
6502709 |
gagagcatacattctcatgcgcaagatgtgattcaactattga |
6502667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 6551097 - 6551044
Alignment:
| Q |
177 |
tttttaatactaaatgttttgattcatttgactattatgagtttagcaaattta |
230 |
Q |
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|||||||| || ||||||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
6551097 |
tttttaattgtacatgttttgaatcatttgattattatgagtttaggaaattta |
6551044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 469 - 759
Target Start/End: Complemental strand, 367918 - 367623
Alignment:
| Q |
469 |
tttgataatttttactatgtgaatgaaattctggaaaatatgtagtacaaatagagtattgctcaagtgtggttggaccaataattatatgttgtttata |
568 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
367918 |
tttgataatttttactatgtgaatgaaattctggtaaatatgtaggacaaatagagtattgctcaagtgtggttggatcaataattatatgttgtttata |
367819 |
T |
|
| Q |
569 |
tgtatatgcatgctagt---ggtgactaatgcctttgtcaccattgttttggttggttggtttgaacgttcaagtgtggttagagtgcttgtttgcgtca |
665 |
Q |
| |
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|||||||| || |||| || | |||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||| |||| | | |
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|
| T |
367818 |
tgtatatgaattttagtggcggcggctaatgcctttgtcaccattgttttggttgcctggtttgaatgttcaagtgtggctggagtgcttgcttgcttta |
367719 |
T |
|
| Q |
666 |
tttacataccataaatttaaac--tgttatatctgaagttttcttccgcctttgtgcaaagactttgcgtagtttaaaaacctaaatttgttcatt |
759 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||| |||| |||| ||||||||||| |||||||||| |
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| T |
367718 |
tttacataccataaatttaaactatgttatgtctgaagttttcttctgcctttgtgtgaagattttgtttagtctaaaaacctaattttgttcatt |
367623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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