View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7860_low_4 (Length: 412)
Name: NF7860_low_4
Description: NF7860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7860_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 10678623 - 10678253
Alignment:
| Q |
19 |
ggtttggggagcgagggatgttagagtggtaaatttaagtctattggttaaatgactttggagattgatccaaggggaacatcctttggaaatatgtcct |
118 |
Q |
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| T |
10678623 |
ggtttggggagcgagggatgttagagtggtaaatttaagtctattggctaaatgactttggagattgatccaaggggaacatcctttggaaatatgtcct |
10678524 |
T |
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| Q |
119 |
caggtgtaaatatggggagagggtgtgtagttgttggaaggtaatggttaaaagtcatcaaagaccgttgatatctctaggaaactccttttagatcaat |
218 |
Q |
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| T |
10678523 |
caagtgtaaatatggggagagggtgtgtggttgttggaaggtaatggttaaaagtcatcaaagaccgttgatatctcaaggaaactccttctag----at |
10678428 |
T |
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| Q |
219 |
catatctcaacaaagattaatttctcaaggagaaatgtcttaacaccgggtgcttcttagaattgtgctttttgtggtggtggtgaggaaagttcttctc |
318 |
Q |
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| T |
10678427 |
catatcccaacaaagattaatttctcaaggagaaatgtcttaacaccgggtgcttcttagaattgtgctttttgtggtggtggtgaggaaagttcttctc |
10678328 |
T |
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| Q |
319 |
acatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaatttgtaattacaac |
393 |
Q |
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| T |
10678327 |
acatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaatttgtaattacaac |
10678253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 43892398 - 43892435
Alignment:
| Q |
263 |
accgggtgcttcttagaattgtgctttttgtggtggtg |
300 |
Q |
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| T |
43892398 |
accgggtgcctctttgaattgtgctttttgtggtggtg |
43892435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 328
Target Start/End: Original strand, 25663952 - 25664052
Alignment:
| Q |
228 |
acaaagattaatttctcaaggagaaatgtcttaacaccgggtgcttcttagaattgtgcttttt---gtggtggtggtgaggaaagttcttctcacatct |
324 |
Q |
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| T |
25663952 |
acaaagactaatttgacaaggagaaatgtctta---ccgcatgcttctttgaattgtgctttttgtggtggtggtggtgaggaaagttcttctcatgtct |
25664048 |
T |
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| Q |
325 |
tctt |
328 |
Q |
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|||| |
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| T |
25664049 |
tctt |
25664052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 382
Target Start/End: Original strand, 47209992 - 47210086
Alignment:
| Q |
288 |
ttttgtggtggtggtgaggaaagttcttctcacatcttcttgcattgtgatgtggtgtttaaggtttggctaaaggtgttcaggcggcttaattt |
382 |
Q |
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||||||| ||||||||||||| |||| |||| || |||||||||||||| |||||| | |||| ||| ||||||||||| | |||| ||||| |
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| T |
47209992 |
ttttgtgcaggtggtgaggaaacttctgctcatattttcttgcattgtgaggtggtgatgaaggagtgggaaaaggtgttcatgtggctcaattt |
47210086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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