View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7860_low_6 (Length: 318)
Name: NF7860_low_6
Description: NF7860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7860_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23377659 - 23377872
Alignment:
| Q |
1 |
aaagtgttacaataactattctggttatgtcgaattccttgttactggggtgggataagacgtgattccaactgtatacaagttatgtttgttttgattt |
100 |
Q |
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| T |
23377659 |
aaagtgttacaataactattctggttatgtcgaattccttgttactggggtgggataagacgtgattccaactgtatacgaggtatgtttgttttgattt |
23377758 |
T |
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| Q |
101 |
tggttatgatcattatggcttctacgtgttatttgtttgtgtcatgtggtgtataatcattggaatttggaacgtagtgatttatttatggcaatagcag |
200 |
Q |
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| T |
23377759 |
tggttatgatcattatggcttctacgtgttatttgtttgtgtcatgtggtgtataatcattggaatttggaacgtagtgatttatttatggcaatagcag |
23377858 |
T |
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| Q |
201 |
caaatgataatatt |
214 |
Q |
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|||||||||||||| |
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| T |
23377859 |
caaatgataatatt |
23377872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 271487 - 271424
Alignment:
| Q |
242 |
taaaaaatacacaccaatgtatagagggcacctcctttgaatttgagaggaagtgatggccttc |
305 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
271487 |
taaaaaatacacaccaatgtattgagggcacctcctttgaatttgtgaggaagtgatggccttc |
271424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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