View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7860_low_7 (Length: 287)
Name: NF7860_low_7
Description: NF7860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7860_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 53620183 - 53619927
Alignment:
| Q |
19 |
ctccaaactcgcaaacagagcctaaagattaagtggatgtattatgcagtcatattcattctctctgaaactctgtgtttcttgagttctttcatttact |
118 |
Q |
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| T |
53620183 |
ctccaaactcgcaaacaaagcctaaagattaagtgaatgtattatgcagtcatattcattctctctgaaactctgtttttcttgagttctttcatttact |
53620084 |
T |
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| Q |
119 |
actagattcacagtaccaataacgctgctagaattcaagtgtgtcaaacttgctgaaagctgattgattggaagggtagtatcatgaaagttttggtctt |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53620083 |
actagattcacagtaccaataacactgctagaattcaagtgtgtcaaacttgctgaaagctgattgattggaagggtagtatcatgaaagttttggtctt |
53619984 |
T |
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| Q |
219 |
tactttaacatgttaaccgttacatgctaaaccaatgccagtatgccacatatgaat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53619983 |
tactttaacatgttaaccgttacatgctaaaccaatgccagtatgccacatatgaat |
53619927 |
T |
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