View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7861_high_16 (Length: 372)
Name: NF7861_high_16
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_high_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 45670610 - 45670965
Alignment:
| Q |
17 |
atcaggagaagaaaacagaaaactagatcacttaatgacttnnnnnnngattaaatccaatggaaccagactaaattgaaaacgataaacaatggatgat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45670610 |
atcaggagaagaaaacagaaaactagatcacttaatgacttaaaaaaagattaaatccaatggaaccagactaaattgaaaacgataaacaatggatgat |
45670709 |
T |
|
| Q |
117 |
taaaattatgatggccaagataaagatagagagaagggccaggtcgtttgccccagaaaattcattaaggaacagttaacatggtaaatgaaggcataca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45670710 |
taaaattatgatggccaagataaagatagagagaagggccaggtcgtttgccccagaaaattcattaaggaacagttaacatggtaaatgaaggcataca |
45670809 |
T |
|
| Q |
217 |
tatacgatggaccatattaactatttgaacttgagagtccggagtaggcctacattgtccttggttttaatttgttatgaagtttccttacataatagta |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45670810 |
tatacgatggcccatattaactatttgaacttgagagtccggagtaggcctacattgttcttggttttaatttgttatgaagtttccttacataatagta |
45670909 |
T |
|
| Q |
317 |
ttggatgaaatttgttttgaattgttcataaaaccatccattaatttaaattttgg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45670910 |
ttggatgaaatttgttttgaattgttcataaaaccatccattaatttaaattttgg |
45670965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University