View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_high_2 (Length: 707)

Name: NF7861_high_2
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_high_2
NF7861_high_2
[»] chr1 (1 HSPs)
chr1 (1-694)||(52375187-52375880)


Alignment Details
Target: chr1 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 1 - 694
Target Start/End: Original strand, 52375187 - 52375880
Alignment:
Q  1 tctggtggagaaaggcgtcgagtttcaatcggaatcgacataatccatgatccaatagtgctcttcctagatgaaccaacttcaggattggattccacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375187 tctggtggagaaaggcgtcgagtttcaatcggaatcgacataatccatgatccaatagtgctcttcctagatgaaccaacttcaggattggattccacaa 52375286  T
Q  101 gtgctttcatggttgtgaaagtacttcagagaattgcacaaagtggaagcatcgtgatcatgtcaattcatcaaccaagttacagaatcttaggtcttct 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375287 gtgctttcatggttgttaaagtacttcagagaattgcacaaagtggaagcatcgtgatcatgtcaattcatcaaccaagttacagaatcttaggtcttct 52375386  T
Q  201 tgatcgtatgatcttcttatcgcgtggacagacagtttacagcggttcaccatcgcagttaccttcatactttgcagaattcggccatcccatacctgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375387 tgatcgtatgatcttcttatcgcgtggacagacagtttacagcggttcaccatcgcagttaccttcatactttgcagaattcggccatcccatacctgaa 52375486  T
Q  301 ggtgataaccgaacagaattcgcgttagacctgattcgcgaattggaaggttcaccaggaggaacaaaaagcttagttgaattcaacaaatcatggcaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375487 ggtgataaccgaacagaattcgcgttagacctgattcgcgaattggaaggttcaccaggaggaacaaaaagcttagttgaattcaacaaatcatggcaaa 52375586  T
Q  401 gcatgaccaaacttcacaacaacaatgacatttcacaaaatgcaacaccgtcgttatctttgaaggaagctatcagcgctagcatttccagagggaaatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375587 gcatgaccaaacttcacaacaacaatgacatttcacaaaatgcaacaccgtcgttatctttgaaggaagctatcagcgctagcatttccagagggaaatt 52375686  T
Q  501 agtttctggcgcaacagctgcaactaattcaaatgcaatagccacatcaccatcttcttcatcatcctcaattgtgcctacttatgcaaatccgttttgg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52375687 agtttctggcgcaacagctgcaactaattcaaatgcaatagccacatcaccatcttcttcatcatcctcaatcgtgcctacttatgcaaatccgttttgg 52375786  T
Q  601 attgagttattaacactttcgaagcgttcaataactaattcaaggcgaatgcctgaactatttgggataagattgggcgctgttatggtaactg 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375787 attgagttattaacactttcgaagcgttcaataactaattcaaggcgaatgcctgaactatttgggataagattgggcgctgttatggtaactg 52375880  T

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