View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_high_20 (Length: 276)

Name: NF7861_high_20
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_high_20
NF7861_high_20
[»] chr3 (6 HSPs)
chr3 (7-271)||(34473510-34473774)
chr3 (10-166)||(34372816-34372972)
chr3 (10-166)||(27625781-27625937)
chr3 (10-166)||(34511554-34511710)
chr3 (10-166)||(34467610-34467766)
chr3 (50-158)||(34477572-34477680)
[»] scaffold1215 (1 HSPs)
scaffold1215 (7-166)||(341-500)
[»] chr2 (2 HSPs)
chr2 (7-166)||(10526347-10526506)
chr2 (50-166)||(10533169-10533285)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 34473774 - 34473510
Alignment:
Q  7 aagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaaga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34473774 aagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaaga 34473675  T
Q  107 tttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatcccaacttattcaattcagccacttctctgatgttttcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34473674 tttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatcccaacttattcaattcagccacttctctgatgttttcatt 34473575  T
Q  207 ccaaacacttcccttctctcaactacggtggttgcttttcttcccttctattcttcatattcttc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34473574 ccaaacacttcccttctctcaactacggtggttgcttttcttcccttctattcttcattttcttc 34473510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 34372816 - 34372972
Alignment:
Q  10 ttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaagattt 109  Q
    |||| |||||||||| |  |||| |||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||    
T  34372816 ttaagatcattgtaaattattcattgttctctacatttaataaaaatattgcttcttgtggtatggaaaattatgcacctgatggtgttaccatggattt 34372915  T
Q  110 ccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc 166  Q
    |||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||    
T  34372916 ccaaattattgtactttacagtacatttctcagttatctgcggatctacaggatatc 34372972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 27625937 - 27625781
Alignment:
Q  10 ttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaagattt 109  Q
    ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| ||||||||| || ||||||    
T  27625937 ttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggtgttaccatagattt 27625838  T
Q  110 ccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc 166  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||    
T  27625837 ccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc 27625781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 34511710 - 34511554
Alignment:
Q  10 ttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaagattt 109  Q
    ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| |||||| || || ||||||    
T  34511710 ttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggtgctaccatagattt 34511611  T
Q  110 ccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc 166  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||    
T  34511610 ccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc 34511554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 34467766 - 34467610
Alignment:
Q  10 ttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaagattt 109  Q
    |||||||| |||| |||| |||| |||| |||||||| | ||||||||||| |||||||||| |||||||| ||  |||| ||||||||| || ||||||    
T  34467766 ttaatatcgttgttactcattcattgttctctacatttaataaaaatattgtttcttgtggtatggaaaatcatatacctaatggtgttaccatagattt 34467667  T
Q  110 ccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc 166  Q
    ||| |||||||||||||||| |||||||||||| ||| ||| |||||||| ||||||    
T  34467666 ccagattattgtactttatattacatttctcaactatttgtggatctacatgatatc 34467610  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 34477680 - 34477572
Alignment:
Q  50 taaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaagatttccaaattattgtactttatagtacatttctcaattatctg 149  Q
    ||||| |||||||||||||||| | |||||||||| ||| |||||||||| ||  |||||||||||||||| ||||| ||||||||||||||||||||||    
T  34477680 taaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttctcaattatctg 34477581  T
Q  150 tcgatctac 158  Q
    | |||||||    
T  34477580 tggatctac 34477572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 500 - 341
Alignment:
Q  7 aagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaaga 106  Q
    |||||||||| |||||||||| | || |||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || || |||    
T  500 aagttaatattattgtaactcatccattgttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgataccataga 401  T
Q  107 tttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc 166  Q
    ||||||||||||||||||||| | ||||||||||| |||||||  |||||||| ||||||    
T  400 tttccaaattattgtactttacaatacatttctcagttatctgcagatctacaagatatc 341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 10526506 - 10526347
Alignment:
Q  7 aagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaaga 106  Q
    |||||||||| |||||||||| | || |||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || || |||    
T  10526506 aagttaatattattgtaactcatccattgttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgataccataga 10526407  T
Q  107 tttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc 166  Q
    ||||||||||||||||||||| | ||||||||||| |||||||  |||||||| ||||||    
T  10526406 tttccaaattattgtactttacaatacatttctcagttatctgcagatctacaagatatc 10526347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 10533285 - 10533169
Alignment:
Q  50 taaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttaacaaagatttccaaattattgtactttatagtacatttctcaattatctg 149  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||  | |||||||||||||||||||||||| ||||||||||||  |||||||    
T  10533285 taaaaatattgcttcttgtggtatggaaaattaggcacctgatggcgttacgatagatttccaaattattgtactttacagtacatttctcggttatctg 10533186  T
Q  150 tcgatctacaggatatc 166  Q
      |||||||| ||||||    
T  10533185 cggatctacaagatatc 10533169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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