View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_high_24 (Length: 237)
Name: NF7861_high_24
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9998199 - 9998421
Alignment:
| Q |
1 |
ataacataagcctttgattgcatcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaaataggtgg |
100 |
Q |
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| T |
9998199 |
ataacataagcctttgattgcatcaagagtttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaaataggtgg |
9998298 |
T |
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| Q |
101 |
caatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgttttcat |
200 |
Q |
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| T |
9998299 |
caatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattggatgttttaat |
9998398 |
T |
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| Q |
201 |
gcagggttttgtcatatcagatt |
223 |
Q |
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| T |
9998399 |
gcagggttttgtcatatcagatt |
9998421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 10003936 - 10004137
Alignment:
| Q |
22 |
atcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaaataggtggcaatatattattgcataaata |
121 |
Q |
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| T |
10003936 |
atcaagaatttattttttatgaattatctgtgtaaaagacgtaacaataaattatactatgactgtgtaaaataggtgactatatattatagcataaata |
10004035 |
T |
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| Q |
122 |
attgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcaga |
221 |
Q |
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| T |
10004036 |
attgtatattaacttaagcctgaaattgtttatttatcgatcatcatattagtatatgcttaaaattctatgtttttatgcagggttttgtcatatcaga |
10004135 |
T |
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| Q |
222 |
tt |
223 |
Q |
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|| |
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| T |
10004136 |
tt |
10004137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 9991183 - 9991266
Alignment:
| Q |
140 |
cctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcagatt |
223 |
Q |
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| T |
9991183 |
cctaaaattgtttgtttatcaatcatcatattagtatacgcctaaaattatatgttttcatgcagggttttgtcatatcagatt |
9991266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 10012693 - 10012747
Alignment:
| Q |
169 |
attagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcagatt |
223 |
Q |
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| T |
10012693 |
attagtatatgcttaaaattctttgttttcctttagggttttaccatatcagatt |
10012747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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