View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7861_high_27 (Length: 218)
Name: NF7861_high_27
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7861_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 33342904 - 33342795
Alignment:
| Q |
18 |
aattttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatataataaaattcttcattcattctc |
117 |
Q |
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| T |
33342904 |
aattttaccccacacccttacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatataataaaattcttcattcattctc |
33342805 |
T |
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| Q |
118 |
atttgttcca |
127 |
Q |
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|||||||||| |
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| T |
33342804 |
atttgttcca |
33342795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 33339608 - 33339529
Alignment:
| Q |
123 |
ttccacacccttgttaggatcctctccatttaaacatgatctccatctatctgtcaaagatgttttctctgttaatgatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33339608 |
ttccacacccttgttaggatcctctccatttaaacatgatctccatctatctgtcaaagatgttttctctgttaatgatg |
33339529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 5834725 - 5834790
Alignment:
| Q |
20 |
ttttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc |
85 |
Q |
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| T |
5834725 |
ttttaccccacacccctacatttataccttgaccccaatattttactcaaactgcccaatttaccc |
5834790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 5996090 - 5996023
Alignment:
| Q |
18 |
aattttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc |
85 |
Q |
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| T |
5996090 |
aattttaccccacaccctcacatttataccttcaccctaacattttactcaaagttcccattttaccc |
5996023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 3810697 - 3810759
Alignment:
| Q |
23 |
taccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc |
85 |
Q |
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| T |
3810697 |
taccccacacccctacatttataccttgaccccaacatttgacacaaagtaccaaatttaccc |
3810759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 44344775 - 44344729
Alignment:
| Q |
18 |
aattttaccccacacccctacatatataccctcatcccaacatttta |
64 |
Q |
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| T |
44344775 |
aattttacccgatacccctacatttataccctcaccccaacatttta |
44344729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 18838399 - 18838439
Alignment:
| Q |
19 |
attttaccccacacccctacatatataccctcatcccaaca |
59 |
Q |
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| T |
18838399 |
attttacccaacacccctacatttataccctcaccccaaca |
18838439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 26502577 - 26502639
Alignment:
| Q |
23 |
taccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc |
85 |
Q |
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|||||||||||||||||| |||||| | | |||||||||| || |||| |||||| ||||||| |
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| T |
26502577 |
taccccacacccctacatttatacctttaccccaacatttgacacaaactacccaatttaccc |
26502639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 26590137 - 26590075
Alignment:
| Q |
23 |
taccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttaccc |
85 |
Q |
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|||||||||||||||||| |||||| | | |||||||||| || |||| |||||| ||||||| |
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| T |
26590137 |
taccccacacccctacatttatacctttaccccaacatttgacacaaactacccaatttaccc |
26590075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 14272916 - 14272996
Alignment:
| Q |
20 |
ttttaccccacacccctacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatataataaaa |
101 |
Q |
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|||||||||||||||||||| ||||| | |||||||||||| ||||||| |||| | ||||||| | ||||| ||||||| |
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| T |
14272916 |
ttttaccccacacccctacagttatact-tgatcccaacatttcactcaaactacctaatttaccctttatataaaataaaa |
14272996 |
T |
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