View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7861_high_5 (Length: 559)

Name: NF7861_high_5
Description: NF7861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7861_high_5
NF7861_high_5
[»] chr4 (1 HSPs)
chr4 (16-549)||(51988902-51989435)
[»] chr6 (4 HSPs)
chr6 (349-537)||(19855863-19856039)
chr6 (492-541)||(18662846-18662895)
chr6 (398-446)||(18662891-18662938)
chr6 (398-446)||(18669354-18669401)
[»] chr8 (5 HSPs)
chr8 (465-540)||(13145660-13145735)
chr8 (465-537)||(13146728-13146800)
chr8 (471-540)||(26378969-26379038)
chr8 (471-535)||(41490863-41490927)
chr8 (465-536)||(26380027-26380098)
[»] chr3 (8 HSPs)
chr3 (465-537)||(5751088-5751160)
chr3 (465-537)||(5788047-5788119)
chr3 (481-537)||(5692044-5692100)
chr3 (466-537)||(5743406-5743477)
chr3 (466-537)||(5780365-5780436)
chr3 (479-537)||(5791577-5791635)
chr3 (465-537)||(5668296-5668368)
chr3 (465-537)||(5677790-5677862)
[»] chr7 (1 HSPs)
chr7 (488-525)||(7113227-7113264)
[»] chr1 (1 HSPs)
chr1 (481-536)||(9979309-9979364)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Complemental strand, 51989435 - 51988902
Alignment:
Q  16 atatatgaggaataggcaggaagttgatctctatcatggtcaccattgtggcccatgatcttagaagtcgtcaacttctacccactctaacctttccttg 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51989435 atatatgaggaataggcaggaagttgatctctatcatggttaccattgtggcccatgatcttagaagtcgtcaacttctacccactctaacctttccttg 51989336  T
Q  116 gtcgatgtttgtgaggccaagtaggaaggtacgtctagtagtgctggcacgatctagtcacctctaggaaacgtgcacatgctagtagttgtttgccagc 215  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51989335 gtcgatgtttatgaggccaagtatgaaggtacgtctagtagtgctggcacgatctagtcacctctaggaaacgtgcacatgctagtagttgtttgccagc 51989236  T
Q  216 tcggtgttgggcatggatatttcaacattggaggtgtcgtgattatctaggagcaggatagatgtataaagaatatgacagtctacatcccaaatactat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  51989235 tcggtgttgggcatggatatttcaacattggaggtgtcgtgattatctaggagctggatggatgtataaagaatatgacagtctacatcccaaatactat 51989136  T
Q  316 aaagttatagcaataccattccatacagtgtctaccatcaaaagcacgtgtctgcctctcttttggcttgacaacagatagaattgacataaccaatgtc 415  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51989135 aaaattatagcaataccattccatacagtgtctaccatcaaaagcgcgtgtctgcctctcttttggcttgacaacagatagaattgacataaccaatgtc 51989036  T
Q  416 cttttgagtttttaatcaaagaaattacactagtttnnnnnnnnnnnnngatataacttgtaattgaccaaataaaacacatggtagacgatgatgacga 515  Q
    ||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51989035 cttttgagtttttaatcaaagaaattacactagtttaaaaaataaaaaagatataacttgtaattgaccaaataaaacacatggtagacgatgatgacga 51988936  T
Q  516 agaaataaaaagcatcttcaacgtgatgtccatc 549  Q
    ||||||||||||||||||||||||| ||| ||||    
T  51988935 agaaataaaaagcatcttcaacgtgttgtgcatc 51988902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 349 - 537
Target Start/End: Original strand, 19855863 - 19856039
Alignment:
Q  349 accatcaaaagcacgtgtctgcctctcttttggcttgacaacagatagaattgacataaccaatgtccttttgagtttttaatcaaagaaattacactag 448  Q
    ||||||| |||| | | |||||||||| |||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |    
T  19855863 accatcagaagcgcatatctgcctctcatttgacttgacaacggatataattgacataaccgatgtccttttgagtttttaatcaaagaaatcacactcg 19855962  T
Q  449 tttnnnnnnnnnnnnngatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    ||              ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  19855963 tt------------gggatataacttgtaattgaccaaataaaacacatggtatacgatgatgacgaagaaataaagaacatcttcaac 19856039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 541
Target Start/End: Complemental strand, 18662895 - 18662846
Alignment:
Q  492 acacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtga 541  Q
    |||| ||||| |||||||||||||  ||||||||||||||||||||||||    
T  18662895 acacttggtatacgatgatgacgataaaataaaaagcatcttcaacgtga 18662846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 18662938 - 18662891
Alignment:
Q  398 attgacataaccaatgtccttttgagtttttaatcaaagaaattacact 446  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  18662938 attgacataaccagtgtccatt-gagtttttaatcaaagaaattacact 18662891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 18669401 - 18669354
Alignment:
Q  398 attgacataaccaatgtccttttgagtttttaatcaaagaaattacact 446  Q
    ||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  18669401 attgacataaccagtatccttg-gagtttttaatcaaagaaattacact 18669354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 465 - 540
Target Start/End: Original strand, 13145660 - 13145735
Alignment:
Q  465 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtg 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13145660 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaatcatcttcaacgtg 13145735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 13146800 - 13146728
Alignment:
Q  465 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13146800 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaatcatcttcaac 13146728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 26378969 - 26379038
Alignment:
Q  471 acttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtg 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26378969 acttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaatcatcttcaacgtg 26379038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 471 - 535
Target Start/End: Original strand, 41490863 - 41490927
Alignment:
Q  471 acttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttca 535  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  41490863 acttgtaattgaccaaataaaacacatggtagatgatgatgatgaagaaataaaaagcatcttca 41490927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 465 - 536
Target Start/End: Complemental strand, 26380098 - 26380027
Alignment:
Q  465 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaa 536  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||| |||||||||    
T  26380098 gatataacttgtaattgaccaaataaaacacattatttacgatgatgacgaagaaataaaaatcatcttcaa 26380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 5751160 - 5751088
Alignment:
Q  465 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    |||||||||||| |  ||||||||| ||||||| ||||  ||||||||||||||||||||||| |||||||||    
T  5751160 gatataacttgtgacagaccaaatagaacacatagtagctgatgatgacgaagaaataaaaagaatcttcaac 5751088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 5788119 - 5788047
Alignment:
Q  465 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    |||||||||||| |  ||||||||| ||||||| ||||  ||||||||||||||||||||||| |||||||||    
T  5788119 gatataacttgtgacagaccaaatagaacacatagtagctgatgatgacgaagaaataaaaagaatcttcaac 5788047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 5692100 - 5692044
Alignment:
Q  481 gaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    ||||||||| |||| |||||||  ||||||||||||||||||||||| |||||||||    
T  5692100 gaccaaatagaacatatggtagctgatgatgacgaagaaataaaaagaatcttcaac 5692044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 5743477 - 5743406
Alignment:
Q  466 atataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    ||||||||||| |  ||||||||| |||| |||||||  ||||||||||||||||||| ||| |||||||||    
T  5743477 atataacttgtgaaagaccaaatagaacatatggtagctgatgatgacgaagaaataagaagaatcttcaac 5743406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 5780436 - 5780365
Alignment:
Q  466 atataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    ||||||||||| |  ||||||||| |||| |||||||  ||||||||||||||||||| ||| |||||||||    
T  5780436 atataacttgtgaaagaccaaatagaacatatggtagctgatgatgacgaagaaataagaagaatcttcaac 5780365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 5791635 - 5791577
Alignment:
Q  479 ttgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    ||||||||||| |||| | |||||  ||||||||||||||||||||||| |||||||||    
T  5791635 ttgaccaaatagaacatacggtagctgatgatgacgaagaaataaaaagaatcttcaac 5791577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 5668368 - 5668296
Alignment:
Q  465 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    |||||||||||| |  ||||||||| |||| |||||||  ||||||| ||  ||||||||||| |||||||||    
T  5668368 gatataacttgtgaaagaccaaatagaacatatggtagctgatgatgtcgtggaaataaaaagaatcttcaac 5668296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 5677862 - 5677790
Alignment:
Q  465 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 537  Q
    |||||||||||| |  ||||||||| |||| |||||||  ||||||| || |||||| ||||| |||||||||    
T  5677862 gatataacttgtgaaagaccaaatagaacatatggtagctgatgatgtcgtagaaatgaaaagaatcttcaac 5677790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 525
Target Start/End: Original strand, 7113227 - 7113264
Alignment:
Q  488 taaaacacatggtagacgatgatgacgaagaaataaaa 525  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  7113227 taaaatacatggtagacgatgatgacgaagaaataaaa 7113264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 536
Target Start/End: Complemental strand, 9979364 - 9979309
Alignment:
Q  481 gaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaa 536  Q
    ||||| ||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  9979364 gaccacataaaacacatggtagatgcagatgacgaagaaataaacatcatcttcaa 9979309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University